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ENA Browser

ENA Browser. 2. SRA Accessioning System. ERAnnnnnn. ERPnnnnnn. NCBI. DDBJ. ERXnnnnnn. ERZnnnnnn. ERSnnnnnn. SRA format. ERRnnnnnn. confidential. released. Standardised fastq. Some Example Studies. SRA Study: ERP000973 : MicroRNA expression in primates II

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ENA Browser

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  1. ENA Browser

  2. 2 SRA Accessioning System ERAnnnnnn ERPnnnnnn NCBI DDBJ ERXnnnnnn ERZnnnnnn ERSnnnnnn SRA format ERRnnnnnn confidential released Standardised fastq

  3. Some Example Studies • SRA Study: ERP000973 : MicroRNA expression in primates II • SRA Study: ERP001015 : Antarctic Dry Valleys Seal Transplant • SRA Study: ERP000712 : Global assessment of genomic variation in cattle by genome resequencing and less high-throughput genotyping • SRA Study: ERP000762 : Global analysis of repetitive sequences in Silene latifolia using low-pass WGS data • SRA Study: ERP001124 : Tasmanian_Devil_Chromosome_sequencing • SRA Study: ERP001144 : New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing

  4. ENA Home Page http://www.ebi.ac.uk/ena/home 300 trillion bases vs 461 billion bases

  5. ENA Text Search

  6. ENA Text Search

  7. ENA Text Search – sample objects

  8. ENA Text Search – Queries are pre-run

  9. Find the Study for an Overview

  10. Find the Study for an Overview

  11. Objects are addressed according to their Accession http://www.ebi.ac.uk/ena/data/view/SRP001725

  12. The Primates Example …. (http://www.ebi.ac.uk/ena/data/view/ERP000973)

  13. The Primates Example …. http://www.ebi.ac.uk/ena/data/view/ERS068325

  14. The Primates Example …. http://www.ebi.ac.uk/ena/data/view/ERR050791

  15. The Primates Example …. ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050791/ERR050791.fastq.gz

  16. You can transfer runs to a Galaxy Session

  17. The Primates Example ….

  18. The Primates Example …. ftp://ftp.sra.ebi.ac.uk/vol1/ERA064/ERA064394/fastq/GORILLA1_brain.txt.gz

  19. The Primates Example ….

  20. The Primates Example ….

  21. The Primates Example ….

  22. The Primates Example ….

  23. Request Text and/or XML http://www.ebi.ac.uk/ena/data/view/ERP000973&display=xml

  24. XMLs are Parse-able

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