1 / 13

Welcome from the caBIG™ Tissue Banks and Pathology Tools (TBPT) Workspace!

Welcome from the caBIG™ Tissue Banks and Pathology Tools (TBPT) Workspace! . Introduction for caBIG™ Newcomers – . What’s the Workspace Mission? . The primary mission of the Tissue Banks and Pathology Tools (TBPT) Workspace is to Develop biobanking and pathology solutions,

linette
Download Presentation

Welcome from the caBIG™ Tissue Banks and Pathology Tools (TBPT) Workspace!

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Welcome from the caBIG™ Tissue Banks and Pathology Tools (TBPT) Workspace! Introduction for caBIG™ Newcomers –

  2. What’s the Workspace Mission? • The primary mission of the Tissue Banks and Pathology Tools (TBPT) Workspace is to • Develop biobanking and pathology solutions, • Grow an adopter community that employs these solutions, and • Foster a collaborative culture to collect, integrate, and share data • TBPT solutions support interoperability with other caBIG™ compatible tools to advance translational research through cross-disciplinary information integration

  3. Why Is TBPT Important? ? • It creates the framework for 21st century biospecimen research Yesterday Today

  4. We Serve Two Primary Audiences • For Bio-Bankers We Provide: • A solution to capture all bio-banking related workflows and information, including participant, collection protocol, biospecimen, storage, annotation data, consent tracking, and distribution protocol. • For Researchers We Provide: • A solution to conduct federated queries across available caTissue databases and to order and manage biospecimen for research activities

  5. We Offer The Following Solutions (1/4)

  6. We Offer The Following Solutions (2/4)

  7. We Offer The Following Solutions (3/4)

  8. We Offer The Following Solutions (4/4) caTISSUE Suite (WU) – Integrated suite that includes the functionalityof the first three tools plus consent tracking, dynamic vocabulary extension • Find all cases of prostate ductal carcinoma of Gleason grade 3+4 for which there are frozen tissue samples containing at least 50% neoplastic cellularity available. • Find all cases of squamous cell carcinoma of the tongue base with perineural invasion for which there is at least 5 ug of matching RNA from non-malignant tissue and tumor with at least 50% neoplastic cellularity. Participant Annotation Event De-ID Accession Annotation Set Surgical Pathology Specimen Pathology Annot. Storage Clinical Annot. Distribution Tumor Registry Study Core CAE caTIES

  9. For Those New to caBIG™ (1/3) • Check out detailed information about our workspace, activities, and all of our solutions on the TBPT Portal TBPT Portal: https://cabig.nci.nih.gov/workspaces/TBPT

  10. For Those New to caBIG™ (2/3) • From our TBPT Portal you can follow the links to try out online versions of our solutions caTissue Core Online: http://catissuecore.wustl.edu/catissuecore

  11. For Those New to caBIG™ (3/3) • Use NCICB’s support helpdesk to get answers to all of your questions about any of our solutions NCICB support homepage: http://ncicb.nci.nih.gov/NCICB/support

  12. Ongoing Workspace Activities • Workspace members are working on the following projects • Developing solutions for TBPT, specifically within the caTissue Suite project • Shaping the future of our solutions (at face-to-face meetings) • Adopting our solutions to satisfy a variety of needs • Sharing best practices with the community (in regular calls) • Sharing data (as permitted) • Growing our community • Interacting with other workspaces to start realizing the paradigm of translational medicine

  13. Workspace Information • caBIG™ TBPT Workspace Website (public website with workspace contacts, meeting minutes, and useful links): https://cabig.nci.nih.gov/workspaces/TBPT • caBIG™ TBPT Listserv (subscribe to get regular announcements): https://list.nih.gov/archives/cabig_tbpt-l.html • caBIG™ TBPT Workspace calls (3rd Monday of each month, 12:00pm – 1:00pm EST, see announcements on the listserv) • caBIG™ TBPT GForge Site (includes workspace working documents): https://gforge.nci.nih.gov/softwaremap/trove_list.php?form_cat=340

More Related