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DTIAtlasFiberAnalyzer

DTIAtlasFiberAnalyzer is a user-friendly open-source software that applies atlas fibers to all datasets. It extracts fiber profiles and gathers information, displaying it through plotting data. The GUI includes the tool DTIParametrization and can be used with or without a graphical user interface.

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DTIAtlasFiberAnalyzer

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  1. DTIAtlasFiberAnalyzer • Open-source, friendly user software • Applies an atlas fibers to all datasets • Extracts the Fiber profiles and gathers all the information • Display all the informations by plotting datas • GUI include the tool DTIParametrization • Can be called with or without graphical user interface.

  2. DTIAtlasFiberAnalyzer Step 1 : Defining data parameter 1- Enter the Csv filename 2- Or create a new Csv 3- Csv table representation 4- Modifiy the table  (add/delete a row/column) 5- Number which column will  represent Datas, Deformation or Case's name 6- Save or delete Csv 7- Choose an Output Folder 8- Go to next step or compute  all if all required information  are specified 9- Navigate through each step 10- File menu : Save or Load  parameters files to provide  required informations

  3. DTIAtlasFiberAnalyzer Plotting Window 1- Curve's information exctracted from fiber's .fvp file. 2- Choose which curve you      want to be displayed 3- Curve's display 4- Width pixel option for      each type of curves      (Cases, Atlas,Stat) 5- Define axis scales. 6- Compute correlation and      set a threshold above      which each curves will be     displayed red.

  4. FiberViewerLight • Light version of the FiberViewer tool • Quicker clustering methods such as : Length, Gravity, Hausdorff, Mean and Normalized Cut • 3D visualization by lines instead of tubes • Save your modified fiber in a VTK file

  5. FiberViewerLight Length Method 1- Histogram of the distribution of length     and number of bars     option. 2- Thresholding options     and computation     button. 3- Go to previous step 4- Visualization widget     (red = long fibers,     blue = short fibers)

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