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trpC Gene Annotation in Thiomicrospira crunogena

trpC Gene Annotation in Thiomicrospira crunogena. Phosphoribosylanthranilate Isomerase. 639 bp 212 aa.

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trpC Gene Annotation in Thiomicrospira crunogena

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  1. trpC Gene Annotation in Thiomicrospiracrunogena

  2. PhosphoribosylanthranilateIsomerase • 639 bp • 212 aa >637785520 YP_391072 phosphoribosylanthranilateisomerase (EC 5.3.1.24) (IMGterm) [Thiomicrospiracrunogena XCL-2: NC_007520] MQSRTRVKICGITNTADADQAVQAGADALGFVFYDKSPRAVTIDQAWPVF QTLPAFVTTTALFVNPDVALVEKVIEDLKIDLLQFHGDESPAFCEQFSRP YIKAVRMQAETDLEQLACQYVSSQGLLLDTYVKGIPGGTGAAFNWDWVLP EKRQNVTLPVILAGGLNDENVGQAVRAVRPWAVDVSGGVESAPGQKSSEK IQAFIQAVNNVR

  3. The gene lies in an operon, but dissimilar to that of the E. coli trpoperon. • It lies immediately upstream of trpA, and no other trp genes are present in this operon.

  4. Multiple alignments show the conserved amino acid sequence. • Start codon appears to be correct. • To get to this format: • www.expasy.ch • Go to Alignment under Tools • Under Alignment, click, under Muscle, Berkeley • This will not work, so click on Muscle at EBI • Paste in your sequences in FASTA (you would have downloaded from BLAST) • Then RUN • In the Results of Search box, click on Start JalView

  5. Neighborhood Six Frame translation indicates that the start codon is good (red ATG)

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