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Supplementary Figure 1. Segmental duplication in telomere fo Chr3s. 580K. 550K. 560K. 570K. ChrSy. Chromosome location. 40K. 1 0K. 2 0K. 30K. Chr3S. Supplementary Figure 2. Illustration of origination pattern and mechanisms of all new gene in O. sativa Chr3s. TAG. ATG. ATG. TAA.

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  1. Supplementary Figure 1. Segmental duplication in telomere fo Chr3s 580K 550K 560K 570K ChrSy Chromosome location 40K 10K 20K 30K Chr3S

  2. Supplementary Figure 2. Illustration of origination pattern and mechanisms of all new gene in O. sativa Chr3s TAG ATG ATG TAA LOC_Os03g01008 LOC_Os03g01014 A 1kb 1kb TAA B ATG ChrSy.fgenesh.mRNA.82 ATG TAG ChrSy.fgenesh.mRNA.80

  3. ATG TGA TAA ATG LOC_Os03g01020 LOC_Os03g01490 100bp ATG TAA C TGA ATG 1kb ChrSy.fgenesh.mRNA.85 LOC_Os03g01420 D

  4. ATG TAA ATG LOC_Os03g02130 TGA LOC_Os03g02340 1kb E TAA ATG 1kb LOC_Os01g63170 ATG TAG LOC_Os05g05090 F

  5. TGA ATG G ATG TGA LOC_Os03g04760 LOC_Os03g03050 1kb ATG TGA TGA ATG 1kb LOC_Os05g11820 LOC_Os07g20240 ATG TAA LOC_Os03g07090 H 100bp I ATG TGA LOC_Os11g08990

  6. ATG TGA LOC_Os03g07270 J 100bp ATG TAA ATG TAG LOC_Os03g09130 LOC_Os01g57250 1kb K L ATG TAG ATG TAG LOC_Os03g18760 LOC_Os11g07660 ATG TGA LOC_Os03g07690 ATG TAG LOC_Os01g22910 500bp

  7. N ATG LOC_Os03g12480 TGA 19bp ATG TGA 1kb LOC_Os03g11860 O TGA ATG LOC_OS06g42410 1kb ATG TAA LOC_OS01g09060 M TAG ATG LOC_Os03g10840 1kb ATG TAG LOC_Os03g11130

  8. TAG ATG P LOC_Os03g15110 1kb TGA TGA ATG ATG LOC_Os03g46230 LOC_Os03g15060 100bp ATG TGA LOC_Os01g19250 Q ATG TAA LOC_Os03g12580 ATG TGA 1kb LOC_Os06g01010 R

  9. ATG TAA LOC_Os03g16320 S ATG ATG TAA LOC_Os03g21310 TGA 1kb LOC_Os04g50840 U 1kb ATG T TGA LOC_Os08g33280 ATG TGA LOC_Os03g18650 ATG 500bp TGA LOC_Os05g38540

  10. V TGA ATG LOC_Os03g24990 ATG TGA 1kb W ATG LOC_Os03g24960 TGA LOC_Os03g24630 ATG TGA 1kb TGA ATG LOC_Os05g36060 LOC_Os03g24980 1kb X TGA ATG LOC_Os03g24970

  11. ATG TAA LOC_Os03g25950 ATG Y TGA LOC_Os03g29140 100bp ATG TGA LOC_Os12g32810 ATG TAA 100bp LOC_Os09060 Z

  12. AB ATG TAA LOC_Os03g32526 ATG LOC_Os03g33920 100bp ATG 1kb TAA ATG TAG LOC_Os06g20500 TAG LOC_Os06g36630 AC

  13. Supplementary Figure 3. Chromosomal position and annotation of four tandem O. sativa young genes in Chr3S Intermediate chromosomal arm 18440K 18450K 18430K Chr4 14250K 14260K 14270K Chr3S

  14. Supplementary Figure 4. Gene tree of SWIM zinc finger gene family. Bootstrap values (%) >50 are shown above branches

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