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Open Science in the Cloud: Towards a Universal Platform for Scientific and Statistical Computing

Open Science in the Cloud: Towards a Universal Platform for Scientific and Statistical Computing. Karim Chine karim.chine@gmail.com. Elastic-R: Collaborative Virtual e-Research and e-Learning Environment In The Cloud.

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Open Science in the Cloud: Towards a Universal Platform for Scientific and Statistical Computing

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  1. Open Science in the Cloud: Towards a Universal Platform for Scientific and Statistical Computing Karim Chine karim.chine@gmail.com

  2. Elastic-R:Collaborative Virtual e-Research and e-Learning Environment In The Cloud

  3. The IaaS-style cloud as a reproducible research platform :Sweave.Cloud

  4. Elastic-R Amazon Machine Images Elastic-R AMI 1 R 2.10 + BioC 2.5 Elastic-R AMI 2 R 2.9 + BioC 2.3 Elastic-R AMI 2 R 2.9 + BioC 2.3 Elastic-R AMI 3 R 2.8 + BioC 2.0 Elastic-R EBS 4 Data Set VVV Amazon Elastic Block Stores Elastic-R AMI 2 R 2.9 + BioC 2.3 Elastic-R EBS 4 Data Set VVV Elastic-R EBS 1 Data Set XXX Elastic-R EBS 2 Data Set YYY Elastic-R EBS 3 Data Set ZZZ Elastic-R EBS 4 Data Set VVV

  5. Decentralized collaboration : Elastic-R portal as an EC2 AMI

  6. Amazon Virtual Private Cloud Subnet 2 Subnet 1 Subnet 3

  7. Software + Services =Applications Convergence + Collaboration

  8. The Cloud Applications Factory: Easy to produce/publish/share GUIs for Science

  9. Elastic-R AJAX Workbench Visual Graphic User Interface Builder Uploadplugin Standalone Application Accessible From a URL Elastic-R Java Workbench • Plugins Repository • myPlugin • myDashboard

  10. Distributed Computing: HTC for everyone

  11. Restful WS over SSL Restful WS over SSL SOAP over SSL Heartbeat Restful WS over SSL SSH HTTPS

  12. Digital Solidarity: Vouchers for Scientific Cloud Resources

  13. AWS Credentials + Private Key XXYYZZ XXYYZZ XXYYZZ XXYYZZ Generate token Deliver token Use token Activate token Launch machine instance Register machine instance Use R console Call R Engine

  14. Demo

  15. Useful links • Elastic-R Portal : • www.elasticr.net • Platform Web Site: • www.elasticr.net/platform • Articles : • Karim Chine, "Open Science in the Cloud: Towards a Universal Platform for Scientific and Statistical Computing", Chapter 19 in “Handbook of Cloud Computing”, Springer, 2010 (in press) • Karim Chine, "Scientific Computing Environments in the age of virtualization, toward a universal platform for the Cloud" pp. 44-48, 2009 IEEE International Workshop on OpensourceSoftware for Scientific Computation (OSSC), 2009 • Karim Chine, "Biocep, Towards a Federative, Collaborative, User-Centric, Grid-Enabled and Cloud-Ready Computational Open Platform,“ escience,pp.321-322, 2008 Fourth IEEE International Conference on eScience, 2008 • Linkedin Group: • http://www.linkedin.com/groups?home=&gid=2345405

  16. Acknowledgments ACS: MadiNassiriAmazon: Simone Brunozzi, Deepak Singh AT&T Research Labs: Simon UrbanekATUGE: ImenEssafi, BéchirTourki, IlyesGouja, HatemHachicha, Amine ElleuchAuckland Centre for eResearch: Nick Jones Banca d'Italia: Giuseppe Bruno Bio-IT World: Kevin Davies BNP Paribas: OusseynouNakoulimaCambridge Healthtech Institute: Cindy CrowninshieldCity University of New York: Mario Morales, MakramTalihColumbia University: Omar BesbesDassaultSystèmes: Omri Ben Ayoun, Patrick Johnson Dataspora: Michael E. Driscoll EDF: Alejandro RibesEBI: AlvisBrazma, Wolfgang Huber, KimmoKallio, MishaKapushesky, Michael Kleen, Alberto Labarga, Philippe Rocca-Serra, UgisSarkans, Kirsten Williams, Eamonn Maguire EPFL: Darlene Goldstein ESPRIT: Farouk Kammoun, Tahar. Benlakhdare-Taalim: NadhirDoumaETH Zürich: YohanChalabi, DiethelmWürtz, Martin MächlerEuropean Commission: KonstantinosGlinos, EnricMitjana, Monika Kacik, IoannisSagiasFHCRC: Martin Morgan, Nianhua Li, Seth Falcon Google: Olivier BosquetFVG LLC: Lisa Wood Harvard University: Tim Clark, Sudeshna Das, Douglas Burke,PaoloCiccareseIBM: Jean-Louis Bernaudin, Pascal Sempe, Loic Simon, Lea A Deleris, Alex Fleischer, Alain ChabrierImperial College London: AsifAkram, VasaCurcin, John Darlington, Brian Fuchs Indiana University:MichaelGrobeINRIA: David Monteau, Christian Saguez, Claude Gomez, SylvestreLedruJISC: John Wood, David Flanders Johnson & Johnson - Janssen Pharmaceutica: Patrick MarichalKXEN: Eric MarcadeLancaster University: Robert Crouchley, Daniel GroseLeibniz Universität Hannover: KorneliusRohmeierLIAMA:Baogang Hue, Kang CaiLimagrain: ZivanKaramanMekentosj: Alexander Griekspoor, Matt Wood Microsoft: Eric Le Marois, Tony Hey Mubadala: Ghazi Ben Amor Nature Publishing Group: Ian Mulvany, Steve Scott NCeSS: Peter Halfpenny, Rob Procter, MarziehAsgari-Targhi, Alex Voss, YuWei Lin, Mercedes ArgüelloCasteleiro, Wei Jie, MeikPoschen, Katy Middlebrough, Pascal Ekin, June Finch, FarzanaLatif, Elisa Pieri, Frank O'Donnell New York Java User Group: Frank D Greco OeRC: Dimitrina Spencer, MatteoTurilli, David Wallom, Steven Young OMII-UK: Neil Chue Hong, Steve Brewer OpenAnalytics: Tobias VerbekeOracle: Dominique van Deth, Andrew Bond OSS Watch: Ross GardlerPlatform Computing: Christopher Smith Royal Society: James WilsdonSan Diego Supercomputer Center: Nancy R. Wilkins-DiehrSanger Institute: Lars Jorgensen, Phil Butcher Shell: Wayne.W.Jones, Nigel Smith SociétéGénérale: Anis MaktoufStanford University: John Chambers, BalasubramanianNarasimhan, Gunter Walther SYSTEM@TIC: KarimAzoumTechnischeUniversität Dortmund: UweLigges, Bernd BischlTechnoforge: Pierre-Antoine DurgeatTekiano: Samy Ben NaceurTélécom-ParisTech: Isabelle Demeure, Georges Hebrail, NesrineGabsiThe Generations Network: Jim PorzakTotal: YannickPerigoisTunisian Ministry of Communication Technologies: NaceurAmmar, LamiaChaffai-Sghaier, Mohamed SaïdOuerghi, SyrineTliliTunisian EcolePolytechnique: RiadhRobbanaUC Berkeley: Noureddine El Karoui, Terry Speed UC Davis: Rudy Beran, Debashis Paul, Duncan Temple Lang UCL: Daniel JeffaresUCLA: IvoDinov, JeroenOomsUC San Diego: Anthony GamstUCSF: Tena Sakai UniversitéCatholique de Louvain: Christian Ritter University of Cambridge: Ian Roberts, Robert MacInnis Peter Murray-Rust, Jim Downing University of Manchester: Carole Goble, Len Gill, Simon Peters, Richard D Pearson, Iain Buchan, John Ainsworth University of Plymouth: Paul HewsonUniversity of Split: IvicaPuljakUTK: Ajay OhriWorld Bank Group-IFC: OualidAmmarYahoo: Laurent Mirguet, Rob WeltmanIndependant:Charles Dallas, Romain François

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