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Demonstrating the Biome-BGC CARBON workflow on Taverna Workbench

Demonstrating the Biome-BGC CARBON workflow on Taverna Workbench. MS11 BioVeL workshop: Ecosystem functioning & valuation web services and workflows ELTE, 6-7 June, 2013. Eszter Lellei-Kovács. MTA Centre for Ecological Research, Institute of Ecology and Botany, Vácrátót. Taverna Workbench.

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Demonstrating the Biome-BGC CARBON workflow on Taverna Workbench

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  1. Demonstratingthe Biome-BGC CARBON workflow on Taverna Workbench MS11 BioVeL workshop:Ecosystem functioning & valuation web services and workflows ELTE, 6-7 June, 2013 Eszter Lellei-Kovács MTA Centre for Ecological Research, Institute of Ecology and Botany, Vácrátót

  2. Taverna Workbench Taverna Workbench 2.4 – an open source workflow management system

  3. … for creating and running workflows …

  4. Inputs (red arrow) and outputs (green arrow) …

  5. Where to find workflows? BioVeL Portal

  6. Where to find workflows? myExperiment Download workflow: Biome-BGC CARBON test & demo version 1.0 annotated

  7. The workflow „Biome-BGC CARBON test & demo version 1.0 annotated” in TAVERNA

  8. Biome-BGCProjectsdatabase • Interactionpage • Beforerunning – Settingsforsimulation • Afterrunning – LookatUseddata and datasets • Prepared datasets for the simulation: • - met file: .mtc43; (spinup and normal running) • - epc for ecophysiological data; • - atmospheric CO2 concentration data • - N deposition data • - output definition • spinup and normal ini setup

  9. Demonstrating results Biome-BGC Projects database

  10. Demonstrating results Oensingen

  11. Thank You!

  12. Biome-BGC is a process-based biogeochemical model that can be used to simulate carbon, nitrogen and water fluxes of different terrestrial ecosystems. The BBGC CARBON executes a single simulation run, which consists of a so called spinup and normal simulation phases pipelined. The simulations require specific parameter inputs like: - spinup and normal initialization files (INI) - daily meteorology dataset file (METDATA) - ecophysiological constants file (EPC) - annual atmospheric CO2 concentration file (CO2 - optional) - annual nitrogen deposition file (NDEF - optional) - site/soil parameters - output control settings of Biome-BGC variables The Biome-BGC Projects database was developed to easy prepare, manage and share all of the above mentioned datasets and provide interaction with Taverna workflows. Learn more about BBGCDB at http://ecos.okologia.mta.hu/bbgcdb/.

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