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GIS DNA-PET Sequencing K562 1k and 10k DNA-PET library data presented here

GIS DNA-PET Sequencing K562 1k and 10k DNA-PET library data presented here GM12878, sample received yesterday and is in processing. 1k DNA-PET data transferred to Colin 10k DNA-PET is in processing of transferring. PETs were loaded into GIS Genomic-Browser Viewer. Deletion.

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GIS DNA-PET Sequencing K562 1k and 10k DNA-PET library data presented here

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  1. GIS DNA-PET Sequencing • K562 1k and 10k DNA-PET library data presented here • GM12878, sample received yesterday and is in processing • 1k DNA-PET data transferred to Colin • 10k DNA-PET is in processing of transferring PETs were loaded into GIS Genomic-Browser Viewer

  2. Deletion chr8:144759768..144799767 Breakpoint 144771617 144785848 1k DNA-PET Counts=8 Counts=171 10k DNA-PET previously reported SV 144771459 144785848 (158bp) (0 bp)

  3. Chr10:126575935..126775934 Deletion (Not previously reported SV) Breakpoint Breakpoint 126631070 126720948 1k gPET Counts=6 10k gPET Counts=60 126720746 126631123 (202bp) (53bp)

  4. Deletion ? chr13:92536893..93536892 Breakpoint Breakpoint ??? 92821369 107298991 1k gPET Counts=43 10k gPET Counts=217 previously reported SVs

  5. Inversion 1k gPET Counts=15 Counts=34 10k gPET Counts=234 Similar counts observed Counts=258 previously reported Inversion Two clusters resulting from the inversion chr10:46416155..46516154 (100 kb span)

  6. Inversion chrX:149309208..149349207 Counts=40 Counts=47 Two clusters resulting from the inversion

  7. chr10:46411324..46511323

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