1 / 2

Raw reads

Accession Number (taxonomy). KEGG (pathway). Raw reads. BLASTN (nt / env_nt). Done for brine, 1500m and 50m. Done for brine. BLASTX (nr / env_nr). Protein (function). Matched. Unmatched. KEGG. Accession Number (taxonomy). Subtractions ( BLASTN + BLASTP/X or TBLASTX ).

mira
Download Presentation

Raw reads

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Accession Number (taxonomy) KEGG (pathway) Raw reads BLASTN (nt / env_nt) Done for brine, 1500m and 50m. Done for brine. BLASTX (nr / env_nr) Protein (function) Matched Unmatched KEGG Accession Number (taxonomy) Subtractions (BLASTN + BLASTP/X or TBLASTX) Done for brine, 1500m and 50m. Pfam PhyMM BLASTN done for brine, 1500m and 50m. Domains (prot. families) Pfam GO Comparisons to HOT/ALOHA and Mediterranean Brine Pools (accession subtraction or sequence subtraction ??) GO (onthology) X Shaheen / CBRC Analysis will be performed using Workstations / CBRC SGI / AUC Time-logic / VBI

  2. KEGG (pathway) Assembly ORFs ORFfinder Running for brine. BLASTX (nr / env_nr) Protein (function) Matched Unmatched Accession Number (taxonomy) Pfam PhyMM Running for brine. Domains Pfam Comparisons to HOT/ALOHA and Mediterranean Brine Pools (accession subtraction or sequence subtraction ??) GO Running for brine. GO (onthology) Shaheen / CBRC Analysis will be performed using Workstations / CBRC SGI / AUC Time-logic / VBI

More Related