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GRID COMPUTING AND SOME RESEARCH ISSUES IN DEVELOPMENT GEOGRID AT VAST

Vietnamese Academy of Science and Technology Institute of Applied Mechanics and Informatics. PRAGMA 17, IOIT. GRID COMPUTING AND SOME RESEARCH ISSUES IN DEVELOPMENT GEOGRID AT VAST. IOIT - Ha Noi, Oct 28-30,2009. Dao Van Tuyet tuyetdv@vast-hcm.ac.vn

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GRID COMPUTING AND SOME RESEARCH ISSUES IN DEVELOPMENT GEOGRID AT VAST

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  1. Vietnamese Academy of Science and Technology Institute of Applied Mechanics and Informatics PRAGMA 17, IOIT GRID COMPUTING AND SOME RESEARCH ISSUES IN DEVELOPMENT GEOGRID AT VAST IOIT - Ha Noi, Oct 28-30,2009 Dao Van Tuyet tuyetdv@vast-hcm.ac.vn Department for Computational & Knowledge Engineering

  2. 1 2 3 4 Development of GEOGRID at IAMI/VAST High-Performance Computing in Vietnam Problems and Proposal in future plan Conclusion Outline 2 PRAGMA 17

  3. Grid Computing The Newe-Science 3 PRAGMA 17

  4. Grid Computing • Grid Computing systems can be reached in to global • Efficient utilization of resources of different organizations • Users do not need to know where the resources is need to build the Distributed Supercomputing 4 PRAGMA 17

  5. Grid Computing centers in Vietnam • 2008: 6 centers • Hanoi University of Technology • HCM University of Technology • Vietnamese National University in Hanoi • Vietnamese Institute of Information Technology (IOIT) • Ha noi • Ho Chi Minh • Vietnamese Military Technical Academy (VMTA) • 2009: one more • Hanoi University of Education 5 PRAGMA 17

  6. TEIN-2 and VINAREN network 6 PRAGMA 17

  7. Colaboration with PRAGMA 7 PRAGMA 17

  8. PRAGMAGrid Members • Using Globus Toolkit in the grid infrastructure Now IAMI 8 PRAGMA 17

  9. PRAGMAGrid Members 9 PRAGMA 17

  10. EUAsiaGrid Members • Using gLite in the grid infrastructure 10 PRAGMA 17

  11. Applications and Middleware in Pragma testbed http://goc.pragma-grid.net/applications/default.html • Open to applications of all scientific disciplines • Climate simulation • Savannah/Nimrod (MU, Australia) • MM5/Mpich-Gx (CICESE, Mexico; KISTI, Korea) • Quantum-mechanics, quantum-chemistry: • TDDFT, QM-MD, FMO/Ninf-G (AIST, Japan) • Genomics • iGAP/Gfarm/CSF (UCSD, USA; AIST, Japan; JLU, China) • HPM: genomics (IOIT-HCM, Vietnam) • mpiBlast/Mpich-G2 (ASGC, Taiwan) • Organic chemistry • Gamess-APBS/Nimrod (UZurich, Switzerland) • Molecular simulation • Siesta/Nimrod (UZurich, Switzerland; MU, Australia) • Amber/Rsh ( USM, Malaysia) • Computer Science • Load Balancer (IOIT-HCM, Vietnam) • GriddLeS (MU, Australia) • 2 applications from Vietnam 11

  12. Grid Computing Activities at IAMI • Collaboration with Pasteur Institute in HCM City 12 PRAGMA 17 Danh sách mẫu bệnh phẩm

  13. Grid Computing activities at IAMI • Scientific Linux 4.5 OS • Java JDK 1.6 or later • gLite UI installed and configured • AMGA 1.3.0 or later • Apache Tomcat 5.5 • Apache Ant 1.7.0 or later • Ant contrib 1.0b3 • Apache Axis 1.4 • Gridsphere 3.0.8 or later • DCMTK (Dicom toolkit) 3.5.4 or later • PostgreSQL 13 http://ui.ioit-hcm.vngrid.org:8080/gridsphere PRAGMA 17

  14. Grid Computing Activities at IAMI • Terra View Tool – Open Source using TerraLib library 14 PRAGMA 17

  15. Grid Computing Activities at IAMI • Using Terraview in some applications 15 PRAGMA 17

  16. The Summary in 5th VAST-AIST Workshop • Grid Computing • Use PRAGMA as an international collaborative framework (Japan and Vietnam are the members of PRAGMA) • National Project on GRID (VN GRID) since early 2008, using TEIN2 (5 nodes in Vietnam) • VN Grid should be the substantial body to work with PRAGMA • PRAGMA 17 meeting will be in Hanoi Oct 2009 and it will organized by VAST (IOIT) and AIST is willingness to join and support • HOPE (Hospital Open Software Platform for E-Health) 16 PRAGMA 17

  17. The Summary in 5th VAST-AIST Workshop • 5 presentations • 2 from AIST • Dr. Handa • Dr. Sekiguchi • 3 from VAST • Ms. Nguyen Thi Phuong Thao (IOIT) • Mr. Dao Van Tuyet (IAMI) with 2 presentations • Topics • 1 on Multilingual support on TaiViet, ChuNom and Cham (AIST) based on Open Source Software on LINUX • 2 on Natural Language Processing (VAST): Statistical Machine Translation and spelling, grammar checking • 2 on GRID Computing (AIST and VAST): 1 on Telemedicine application on GRID and 1 on programming environment for GRID 17 PRAGMA 17

  18. Statelite Data GEO Grid • GEO Grid introduction • The GEO (Global Earth Observation) Grid is aiming at providing an E-Science Infrastructure for worldwide Earth Sciences communities to accelerate GEO sciences based on the concept that relevant data and computation are virtually integrated with a certain access control and ease-of-use interface those are enabled by a set of Grid and Web service technologies. Geosciences Geology Data Environment Conservation Applications GIS WEB Technologies Geo Contents Disaster Migration GIS Data In-situ Data IT Resources 18 PRAGMA 17

  19. A Workflow example 19 PRAGMA 17

  20. A Workflow example (cont.) 20 PRAGMA 17

  21. GEO Grid as E-science system design • ASTER Complete Data Set Online • Handling large (>200TB) data archive for satelite imagery • Accessible as a service • Data Access Policies • Retaining data owner’s publication policies without increasing management cost • Data Intergration • Handling wide diversification of data types, associated metadata, prodcts and services • On-Demand data processing capability • Use workflow for composing complex applications • Run on “Grid managed” resources 21 PRAGMA 17

  22. Predict problems 22 PRAGMA 17

  23. IOIT-HCM • VN Digital Map on Grid (using google map) 23 PRAGMA 17

  24. Encountered Issues • High performance Computingand Grid computing rest in academic research • Not yet: • HPC centers of TeraFlops. • A common networking infrastructure to connect HPC centers • HPC/GC large scale applications 24 PRAGMA 17

  25. PRAGMA 17, IOIT Thank You for your attention ! IOIT - Ha Noi, Oct 28-30,2009

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