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Finland. 301. 310. 314. Sweden. 298. 322. 307. 305. Baltic Sea. Estonia. 327. Russia. Latvia. Figure SM1: Map of part of the Baltic Sea with the sample stations in the Gulf of Finland marked. A. B. C. D. Figure SM2 :

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  1. Finland 301 310 314 Sweden 298 322 307 305 Baltic Sea Estonia 327 Russia Latvia Figure SM1: Map of part of the Baltic Sea with the sample stations in the Gulf of Finland marked.

  2. A B C D Figure SM2: Depth profiles for A) salinity, B) temperature, C) density and D) oxygen saturation

  3. CCY0422 CCY0450 CCY0431 CCY0419 CCY0461 CCY0456 CCY0435 CCY0457 CCY0443 CCY0434 CCY0423 CCY0455 82/100 CCY0416 CCY0417 CCY0492 CCY0441 CCY0424 88/100 CCY0451 BSea A 99/100 CCY0418 CCY0464 CCY0469 CCY0439 CCY0462 CCY0421 --/78 CCY0446 CCY0467 CCY0452 100/100 87/100 CCY0444 CCY0437 CCY0448 CCY0449 CCY0489 CCY0491 CCY0458 CCY0463 CCY0466 CCY0415 97/100 BSea B CCY0436 CCY0465 AANO01000009 Synechococcus WH 5701 AF317073 Synechococcus BO8805 0.01 Figure SM3: Neighbour-joining phylogeny of group BSea isolates

  4. 99 Pelagic LS 99 BS group 3 97 DQ526396 Synechococcus LS0534 99 DQ526397 Synechococcus LS0535 CCY0444 65 CCY0469 89 CCY0443 S320-12-7 AAN01000009 Synechococcus WH5701 52 WH5701 Cluster/ BSea group (PC) strains CCY0416 CCY0441 98 CCY0415 92 CCY0490 65 EF513487 Synechococcus BO8805 86 Group I (2) 99 DQ519960 clone LScpcBA25 99 PD cpcBA 1 Group A (1) 97 PD cpcBA 2 RS9917 99 99 CCY9201 cluster AF223436 Synechococcus PS724 PD cpcBA 3 99 Group C Group D 57 76 PS729 cluster 73 BSea group (32) 99 99 Group E (4) Group B 99 74 99 Group H M95288 Synechococcus WH8020 rpcBA CP000097 Synechococcus CC9902 88 X59809 Synechococcus WH7803 Marine Synechococcus AACY01236433 SAR- partial sequence 98 77 CP000110 Synechococcus CC9605 M95289 Synechococcus sp. 93 BX569694 Synechococcus WH8102 rpcBA 99 AAOK00000000 Synechococcus WH7805 Outgroups 0.05 Figure SM4: Neighbour-joining phylogeny of picocyanobacterial cpcBA operon

  5. CP000239 1 Synechococcus JA-3-3B 1 CP000240 1 Synechococcus JA-2-3B 1 CP000240 2 Synechococcus JA-2-3B 2 CP000239 2 Synechococcus JA 3-3B 2 K02659 Synechococcus PCC7002 AF223458 Synechococcus PCC6717 AF223457 Synechococcus PCC6716 D13173 Synechococcus elongatus AF223464 Synechococcus PCC7943 M94218 Synechococcus PCC6301 M95288 Synechococcus WH8020 rpcBA DQ519992 clone LScpcBA62 AB008546 Synechococcus PCC7942 DQ520008 clone LScpcBA88 DQ525058 clone LScpcBAMay83 DQ520009 clone LScpcBA89 DQ520002 clone LScpcBA79 DQ519980 clone LScpcBA49 DQ519991 clone LScpcBA61 DQ519993 clone LScpcBA63 DQ519978 clone LScpcBA47 DQ525039 clone LScpcBAMay29 DQ519997 clone LScpcBA71 DQ520004 clone LScpcBA82 DQ519957 clone LScpcBA22 DQ519965 clone LScpcBA30 DQ519982 clone LScpcBA52 DQ519953 clone LScpcBA18 DQ519977 clone LScpcBA45 DQ519970 clone LScpcBA36 DQ519990 clone LScpcBA60 BX569694 Synechococcus WH8102 rpcBA DQ519998 clone LScpcBA72 DQ525038 clone LScpcBAMay26 AAOK00000000 Synechococcus WH7805 unF CP000097 Synechococcus CC9902 DQ519943 clone LScpcBA1 DQ520005 clone LScpcBA85 DQ519984 clone LScpcBA54 DQ519950 clone LScpcBA15 DQ520007 clone LScpcBA87 X59809 Synechococcus CP000110 synechococcus CC9605 AACY01236433 SAR- partial sequence DQ525054 clone LScpcBAMay73 DQ520003 clone LScpcBA80 DQ519988 clone LScpcBA58 DQ519975 clone LScpcBA42 DQ525050 clone LScpcBAMay64 DQ520006 clone LScpcBA86 M95289 Synechococcus WH8020 DQ519985 clone LScpcBA55 DQ520011 clone LScpcBA93 DQ525048 clone LScpcBAMay61 0.05 AY151228 Synechococcus MW6C6 DQ519987 clone LScpcBA57 DQ519949 clone LScpcBA13 S298-3-11 AY151229 Synechococcus MW6B6 DQ519996 clone LScpcBA70 S300-12-2 AY151230 Synechococcus MW32B5 DQ525052 clone LScpcBAMay68 DQ519955 clone LScpcBA20 S298-3-6 DQ525033 clone LScpcBAMay20 AY151226 Synechococcus MW25B5 S298-3-3 AY151227 Synechococcus MW33B4 DQ519945 clone LScpcBA4 DQ525044 clone LScpcBAMay46 DQ525040 clone LScpcBAMay34 AY151231 Synechococcus MW28B3 DQ519994 clone LScpcBA64 DQ520001 clone LScpcBA77 DQ519962 clone LScpcBA27 DQ519888 clone PDcpcBA12 DQ519964 clone LScpcBA29 S298-3-1 DQ519900 clone PDcpcBA27 DQ519961 clone LScpcBA26 S298-3-5 DQ519899 clone PDcpcBA26 DQ519963 clone LScpcBA28 DQ519941 clone PDcpcBA92 DQ519946 clone LScpcBA6 DQ519948 clone LScpcBA12 DQ519925 clone PDcpcBA68 DQ519895 clone PDcpcBA21 DQ520000 clone LScpcBA74 DQ525045 clone LScpcBAMay49 DQ519911 clone PDcpcBA48 DQ525056 clone LScpcBAMay78 DQ519909 clone PDcpcBA44 DQ519954 clone LScpcBA19 DQ525041 clone LScpcBAMay40 DQ519920 clone PDcpcBA61 DQ519916 clone PDcpcBA55 DQ519951 clone LScpcBA16 DQ525042 clone LScpcBAMay41 DQ519937 clone PDcpcBA85 DQ519926 clone PDcpcBA70 DQ519968 clone LScpcBA34 DQ525030 clone LScpcBAMay13 DQ519903 clone PDcpcBA32 AY151225 Synechococcus MW26A5 DQ525037 clone LScpcBAMay25 DQ519908 clone PDcpcBA42 DQ519902 clone PDcpcBA31 DQ519959 clone LScpcBA24 DQ519979 clone LScpcBA48 DQ519944 clone LScpcBA2 DQ519986 clone LScpcBA56 DQ525031 clone LScpcBAMay16 AY151215 Synechococcus MW15*2 DQ519971 clone LScpcBA37 AY224203 Synechococcus BO 8809 DQ519956 clone LScpcBA21 AY224202 Synechococcus BO 8807 DQ519947 clone LScpcBA11 AY224204 Synechococcus BO 9202 DQ525053 clone LScpcBAMay72 DQ519974 clone LScpcBA40 AF223448 Synechococcus PS714 DQ519972 clone LScpcBA38 AF223437 Synechococcus PS728 DQ525032 clone LScpcBAMay17 AY151213 Synechococcus MW4C3 DQ519989 clone LScpcBA59 AY151212 Synechococcus MW10*1 DQ525046 clone LScpcBAMay56 AY151211 Synechococcus MW86A1 DQ525051 clone LScpcBAMay65 AY151217 Synechococcus MW77D1 DQ519958 clone LScpcBA23 AY151220 Synechococcus MW74D3 DQ525059 clone LScpcBAMay85 AY151219 Synechococcus MW73D5 DQ525043 clone LScpcBAMay42 AY151218 Synechococcus MW74D6 DQ519995 clone LScpcBA66 DQ520012 clone LScpcBA95 DQ519999 clone LScpcBA73 S320-3-6 DQ519952 clone LScpcBA17 S314-12-10 DQ525047 clone LScpcBAMay58 S320-3-4 DQ520010 clone LScpcBA92 S320-12-8 DQ525049 clone LScpcBAMay63 S320-12-6 AF223435 Synechococcus PS722 DQ525026 clone LScpcBAMay1 AF223445 Synechococcus PS719 DQ519967 clone LScpcBA33 DQ519976 clone LScpcBA43 AF223432 Synechococcus PS723 AF223442 Synechococcus PS726 DQ519966 clone LScpcBA31 AF223449 Synechococcus PS716 DQ519973 clone LScpcBA39 DQ519981 clone LScpcBA51 EF513489 Synechococcus CCY9202 DQ525034 clone LScpcBAMay21 CCY0454 DQ519983 clone LScpcBA53 CCY0470 DQ519969 clone LScpcBA35 CCY0450 DQ525028 clone LScpcBAMay6 CCY0420 DQ520013 clone LScpcBA96 CCY0467 DQ525036 clone LScpcBAMay24 CCY0437 DQ525029 clone LScpcBAMay9 CCY0458 DQ525057 clone lScpcBAMay79 CCY0431 DQ525027 clone LScpcBAMay5 CCY0451 DQ525055 clone LScpcBAMay75 S298-3-8 CCY0464 S298-3-9 CCY0418 S298-3-2 CCY0461 S300-12-6 CCY0434 S300-12-8 CCY0419 CCY0449 CCY0444 CCY0469 CCY0457 CCY0443 CCY0424 S320-12-7 DQ526396 Synechococcus LS0534 CCY0421 CCY0441 CCY0465 DQ526397 Synechococcus LS0535 CCY0415 CCY0436 AAN01000009 Synechococcus WH5701 unF CCY0490 CCY0416 CCY0422 CCY0439 CCY0435 S314-12-9 EF513487 Synechococcus BO8805 CCY0466 S300-3-9 CCY0491 S314-12-6 S314-12-5 CCY0446 CCY0489 S300-12-1 S314-3-8 CCY0417 CCY0448 CCY0463 AY151224 Synechococcus MW100C3 S300-12-4 CCY0452 CCY0455 AY151223 Synechococcus MW97C4 S314-3-1 AY151222 Synechococcus MW99B6 CCY0492 S314-12-4 DQ519886 clone PDcpcBA10 S320-12-2 CCY0423 S300-3-5 S314-3-11 CCY0462 DQ526401 Synechococcus LS0530 S300-12-3 S300-3-2 CCY0456 S320-3-5 S320-3-9 AF223447 Synechococcus PS727 S300-12-7 AF223451 Synechococcus PS729 S300-3-6 S320-3-3 S320-3-2 DQ519917 clone PDcpcBA56 S320-12-3 S314-3-5 DQ519887 clone PDcpcBA11 S320-12-9 DQ519891 clone PDcpcBA15 S314-12-8 DQ519942 clone PDcpcBA93 S314-12-11 CCY0468 CCY0432 DQ519914 clone PDcpcBA51 S300-12-5 DQ519898 clone PDcpcBA25 S300-3-8 S300-12-10 DQ519890 clone PDcpcBA14 DQ519892 clone PDcpcBA16 S300-3-3 S320-12-1 DQ519884 clone PDcpcBA7 S320-3-1 DQ519904 clone PDcpcBA36 S314-12-1 DQ519883 clone PDcpcBA5 AF223438 Synechococcus PS674 S314-12-7 AF223443 Synechococcus PS681 S298-3-7 S298-3-4 S320-12-5 S320-3-10 S314-3-9 S314-3-3 CCY0426 S314-3-10 AF223434 Synechococcus PS673 S300-12-9 DQ519910 clone PDcpcBA46 S314-3-4 S320-12-10 S300-3-1 AF223439 Synechococcus PS676 S314-12-3 AF223433 Synechococcus PS672 DQ525035 clone LScpcBAMay23 DQ519905 clone PDcpcBA37 DQ519940 clone PDcpcBA91 DQ519919 clone PDcpcBA59 S300-3-10 S300-3-7 AF223441 Synechococcus PS678 S300-3-4 DQ519880 clone PDcpcBA1 S320-3-11 S320-3-7 S314-3-6 DQ519927 clone PDcpcBA71 EF513488 Synechococcus CCY9201 DQ526399 Synechococcus LS0503 DQ519896 clone PDcpcBA22 DQ526398 Synechococcus LS0417 DQ519918 clone PDcpcBA58 DQ526403 Synechococcus LS0590 DQ519913 clone PDcpcBA50 DQ519897 clone PDcpcBA24 DQ519885 clone PDcpcBA9 AF223460 Synechococcus PCC7009 DQ519938 clone PDcpcBA89 DQ519912 clone PDcpcBA49 DQ519882 clone PDcpcBA4 AY224201 Synechococcus BO 8801 DQ519893 clone PDcpcBA18 DQ519933 clone PDcpcBA80 DQ519921 clone PDcpcBA62 AF223436 Synechococcus PS724 DQ526402 Synechococcus LS0588 AANP01000000 Synechococcus RS99171 unF DQ519906 clone PDcpcBA38 DQ519889 clone PDcpcBA13 DQ526400 Synechococcus LS0425 AANP01000000 Synechococcus RS99172 unF AF223462 Synechococcus PCC7918 DQ519929 clone PDcpcBA74 AF223428 Synechococcus PS680 AF223463 Synechococcus PCC7920 AF223459 Synechococcus PCC6904 DQ519960 clone LScpcBA25 out-group Marine H LS-clones B E BSea WH5701 I D A Figure SM5: Neighbour-joining phylogeny of picocyanobacterial cpcBA operon

  6. Marine Synechococcus Group E Outgroups Group A BSea group PE Lake Superior Group Group I Bsea group PC Figure SM6: Neighbor-net network based on the 342 cpcBA operon sequences.

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