1 / 1

Create a program that reads a DNA sequence from the keyboard, and reports the sequence length and the G/C content of the sequence (as a fraction) Adapt the G/C script so multiple sequences in FASTA format are read from a file

nessa
Download Presentation

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript


  1. Create a program that reads a DNA sequence from the keyboard, and reports the sequence length and the G/C content of the sequence (as a fraction) • Adapt the G/C script so multiple sequences in FASTA format are read from a file • Modify the script to process a file containing any number of sequences in EMBL format • Now let the program generate the reverse complement of the sequence(s), and report sequence length and G/C content • Using the rand function of Perl to shuffle the nucleotides of the input sequence, while maintaining sequence composition; again report sequence length and G/C content • Create a script to find the DNA fragments you get after cutting the sequence in the example1.fasta file with AluI and with AvaI • Find the open reading frames in the example1.fasta sequence • Translate the open reading frames to protein, using the standard genetic code from the Geneticcode database (http://srs.bioinformatics.nl)

More Related