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Metabolic Reconstruction of Laccaria Bicolor

Metabolic Reconstruction of Laccaria Bicolor. Dag Ahrén Microbial Ecology Lund University, Sweden. Metabolic reconstruction. Pathway Tools Reconstruct metabolic map/ genome database Pathway hole filler Format suitable for browsing (Web) and computation (Lisp/Perl/Java).

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Metabolic Reconstruction of Laccaria Bicolor

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  1. Metabolic Reconstruction of Laccaria Bicolor Dag Ahrén Microbial Ecology Lund University, Sweden

  2. Metabolic reconstruction • Pathway Tools • Reconstruct metabolic map/ genome database • Pathway hole filler • Format suitable for browsing (Web) and computation (Lisp/Perl/Java)

  3. Pathway/Genome Database Laccaria bicolor genome data Scaffolds Pathways Gene models PathoLogic Software Integrates genome and pathway data to identify putative metabolic networks Reactions Intron position Compounds Pathways Pathologic file creator Gene Products Metacyc Reactions Uniprot annotation Genes Compounds Genomic Map Reconstruction of Metabolic Pathways

  4. Metabolic reconstruction of L. bicolor 9315 genes with Uniprot BLASTP match below e-10 Pathways 83 Enzymatic reactions 438 Enzymes 187 Compounds 392

  5. Metabolic reconstruction of L. bicolor

  6. Metabolic reconstruction of L. bicolor

  7. Metabolic reconstruction of L. bicolor

  8. Metabolic reconstruction of L. bicolor • May be useful for identifying possible missing genes in the gene models. Prediction tool. • Draft map provides useful information for joint annotation of metabolic enzymes between groups in the consortium. • Web page to start the investigations. • Web resource for the Laccaria community

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