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Biodiversity Data Journal: mobilization, reuse and integration of small data

Modern taxonomy as a cyberscience meeting 24-25 July 2013 – Crete , Greece. ViBRANT. Biodiversity Data Journal: mobilization, reuse and integration of small data.

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Biodiversity Data Journal: mobilization, reuse and integration of small data

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  1. Modern taxonomy as a cyberscience meeting 24-25July 2013 – Crete, Greece ViBRANT Biodiversity Data Journal: mobilization, reuse and integration of small data Lyubomir D. Penev1,3, Teodor A. Georgiev3, Pavel E. Stoev2,3, Jordan Bisserkov3, Laurence Livermore4, Jeremy Miller5, David M. Roberts4 & Vincent S. Smith4 1 Institute for Biodiversity and Ecosystem Research, Bulgaria 2 National Natural History Museum, Bulgaria 3 Pensoft Publishers 4 The Natural History Museum, UK • 5 NCB Naturalis, Leiden, The Netherlands pensoft.net/journals/bdj

  2. Drawings: slavenapeneva.com Primary data

  3. RE-USE of CONTENT Publishing and sharing of primary data Primary data

  4. Data publishing becomes increasingly important and already affects the policies of the world’s leading science funding frameworks and organizations. The concept of “open data” is described in the Protocol for Implementing Open Access Data, the Open Knowledge/Data Definition, the Panton Principles for Open Data in Science, and the Open Data Manual. 4 of 27

  5. White House Office of Science and Technology Policy (OSTP) created the Big Data Research and Development Initiativestarted29 March 2012 • Directive of the Council of Europe recognising “the strategic importance for Europe’s scientific development of open access to scientific information” • On 17th July 2012, the European Commission outlined measures to improve access to scientific information produced in Europe in a Communication and a Recommendation to the Member States. 5 of 27

  6. Incentives for authors and institutions to publish data • open data increases transparency and the overall quality of science • published data can be verified by other researchers • it can be integrated with other datasets • it increases the potential for interdisciplinary research • duplication of data-collecting efforts and associated costs will be reduced • published data can be indexed and made discoverable 6 of 27

  7. After submission (summary) WRITING REVIEWING PUBLICATION EOL Dryad GBIF PubMed Central and more . . .

  8. Any other data Genome dada Occurrence data Life cycle of data published in the BDJ Biodiversity manuscript Phylogenetic data Morphometric data Image galleries Environmental data XML MARK UP Structured text (data!) Taxon names Taxon treatments Occurrence data ARTICLES Biblio-graphies COL Plazi Wiki BHL

  9. What will BDJ publish? • Single taxon treatments and nomenclatural acts • Local or regional checklists • Sampling reports and occasional inventories • Habitat-based checklists and inventories • Ecological and biological observations • Single identification keys • Biodiversity-related databases, including genomic, ecological and environmental data (data papers) • Biodiversity-related software tools

  10. Choose article template

  11. Authors can choose the review type

  12. Classifications

  13. Add author

  14. Taxon treatment: new species

  15. Taxon treatment: import material data

  16. Taxon treatment: upload of images

  17. Structure of the checklist filed

  18. External links

  19. External links

  20. External links

  21. Construction of key

  22. Key preview

  23. Key features • Biological Codes compliant article templates • No lower/upper limit of manuscript size • Semantically enhanced “articles of the future” • Integrated with GBIF, EOL, Dryad, Scratchpads, etc. ALL DATA MATTERS!

  24. Automated import of treatments from Scratchpads and author’s own databases Structured data Select, describe & annotate data Publication module EOL Dryad GBIF Wiki Species-Id PubMed Plazi Publish, cite, disseminate & archive data

  25. Automated registration Manuscript SUBMISSION Peer review XML Query MANUSCRIPT ACCEPTED XML Response XML article metadata ARTICLEPUBLISHED Taxon name available/valid (effectively published)

  26. Manuscripts are automatically formatted during the writing process Avoids layout stage, decreases costs and efforts!

  27. No installation!Just register and go!

  28. NO Author Guidelines!The tool guides you!

  29. Modern taxonomy as a cyberscience meeting 24-25July 2013 – Crete, Greece ViBRANT LyubomirPenev Thank you for your attention! Dave Roberts Laurence Livermore Jeremy Miller Teodor Georgiev Vince Smith We Open Access!

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