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Supplementary Figure S11 QTL for silique width on the integrated map of linkagegroup A4 by Multiple QTL Mapping. LOD profiles of QTL identified in CTF2, CTF6 and CTF7 are shown along with the combined LOD values on the integrated map. Marker names are on the right of the linkage group bar and the positions in centiMorgans (cM) are on the left. The adjacent graphs show the logarithm of odds (LOD) profile for each linkage group. On the X-axis of the graph are the markers and on the Y-axis the corresponding LOD scores. The dotted line drawn parallel to the X-axis on each graph is the LOD threshold. The position of QTL (one LOD interval) is indicated by bars. The two LOD intervals on either side of the peak are represented by whiskers Tetralocular ovary and high siliquewidth in yellow sarson lines of Brassica rapa (subspecies trilocularis) are due to a mutation in Bra034340 gene, a homologue of CLAVATA3 in Arabidopsis Theoretical and Applied Genetics Satish Kumar Yadava1, Kumar Paritosh1, Priya Panjabi-Massand1,2, Vibha Gupta1, Atika Chandra1,4, Y S Sodhi1, Akshay K Pradhan1,2, Deepak Pental1,2* Address: 1Centre for Genetic Manipulation of Crop Plants, University of Delhi South Campus, Benito Juarez Road, New Delhi – 110021. India. 2Department of Genetics, University of Delhi South Campus, Benito Juarez Road, New Delhi – 110021. India. 3Present address: Department of Botany, University of Delhi, Delhi – 110007.India. 4Present address: Department of Botany, Maitreyi College, University of Delhi, New Delhi – 110021.India. *Corresponding author dpental@gmail.com Telephone: 91-011-24112609 Fax: 91-011-24116392
Integrated-Sw4 A4-Integrated BrGMS867 0.0 At2g44610.1 0.7 10 15 20 25 At2g42610 2.9 0 5 BC_CT_1185 3.2 BC_CT_1282 3.3 BC_CT_1280 5.0 BrGMS2904 6.0 At2g40740 6.4 At2g43430 6.8 BC_CT_1155 7.5 At2g39760 7.9 BC_CT_1014 9.0 BC_CT_1236 10.2 BrGMS82 10.3 BC_CT_1237 10.7 BC_CT_1235 11.4 At2g40890 12.0 At2g38880 12.8 BC_CT_1187 13.8 cnu_m524a 14.4 cnu_m256a 14.9 cnu_m360a.1 16.4 BC_CT_1021 17.0 BC_CT_1015 18.8 BC_CT_1086 20.4 At2g35990 20.8 At2g35770 22.1 BC_CT_1254 23.7 At2g33710 25.1 At2g33620.2 25.3 At2g33040.2 26.6 BrGMS678 27.8 BC_CT_1253 30.2 BC_CT_1109 30.5 At2g30350.1 32.7 At2g29530.1 33.1 BC_CT_1623 33.9 BrGMS336 At2g29540 34.0 At2g29580 34.2 BC_CT_1630 34.3 BC_CT_1622 34.8 BC_CT_1626 34.9 BrGMS729 35.1 BC_CT_1621 BC_CT_1624 35.3 BC_CT_1625 BC_CT_1619 35.4 At2g27170 35.5 35.6 Bra034340 (CLAVATA3) cnu_m246a 35.9 tet-o BC_CT_1627 BC_CT_1628 36.3 BC_CT_1631 36.7 BC_CT_1629 37.2 BC_CT_1613 37.8 BC_CT_1614 BC_CT_1612 37.9 BC_CT_1617 39.2 BC_CT_1606 39.3 BC_CT_1616 39.4 BC_CT_1608 Integrated-Sw4 39.9 BC_CT_1140 40.2 BC_CT_1609 42.1 BC_CT_1610 43.1 BC_CT_1186 43.2 nia_m072a.1 43.3 At5g40200 43.9 BC_CT_1611 44.4 BC_CT_1646 45.2 BC_CT_1634 45.3 At2g22000 45.4 At5g39220 46.2 At2g21120.1 46.8 BC_CT_1647 47.3 BC_CT_1588 BC_CT_1642 48.4 At5g40950 48.5 BC_CT_1644 48.6 At5g40390 48.8 BC_CT_1589 49.0 BC_CT_1639 49.1 At2g44860 BC_CT_1640 49.2 BC_CT_1641 BC_CT_1645 49.3 BC_CT_1590 49.4 BC_CT_1638 BC_CT_1591 49.9 At5g40740 50.0 BC_CT_1633 50.3 At5g40300 50.5 BC_CT_1594 50.6 BC_CT_1593 At5g57655 BC_CT_1592 50.8 BrGMS223 BC_CT_1605 51.2 At5g37360 51.4 BC_CT_1635 51.6 BC_CT_1595 BC_CT_1598 51.9 BC_CT_1037 52.0 BC_CT_1600 BC_CT_1039 BC_CT_1599 52.1 BC_CT_1597 52.2 BC_CT_1601 52.4 BC_CT_1143 52.6 At5g37600.1 52.8 BC_CT_1604 53.0 BC_CT_1603 53.1 BC_CT_1632 53.2 BC_CT_1602 53.3 BC_CT_1163 54.1 BC_CT_1164 54.4 BC_CT_1188 55.2 BC_CT_1189 55.8 nia_m076a.2 56.2 BC_CT_1231 58.3 BC_CT_1078 61.5 BC_CT_1077 63.1 BC_CT_1011 63.2 cnu_m566a 66.0 cnu_m123a 66.4 BrGMS2125 66.5 cnu_m436a 67.2 BrGMS247 71.9 CTF2-Sw4 CTF6-Sw4 CTF7-Sw4
