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Pathway Database Pathway Comparison Expression Viewer Discovery.

Pathway Database Pathway Comparison Expression Viewer Discovery. Pankaj Jaiswal Oregon State University. Pathways. Pathway Home. Reference Pathway databases developed by collaborators. Developed by Gramene. Developed by Collaborators and mirrored at Gramene. Gramene Pathway Navigation.

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Pathway Database Pathway Comparison Expression Viewer Discovery.

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  1. Pathway DatabasePathway ComparisonExpression ViewerDiscovery. Pankaj Jaiswal Oregon State University

  2. Pathways

  3. Pathway Home Reference Pathway databases developed by collaborators Developed by Gramene Developed by Collaborators and mirrored at Gramene

  4. Gramene Pathway Navigation

  5. Pathway Browse Options

  6. Search Options and Selecting the Database

  7. Search Example and Pathway Views Evidence Zoom upto chemical structures Metabolites and small molecules Gene product Enzyme Downstream pathways

  8. Pathway Comparison Click to visit pathway Click to visit the reaction Click to visit the gene product

  9. Discovery Environment: Pathway comparison

  10. Cases with homologs not sharing the same Pathway

  11. Rice KS8 Vs Ath KS1 http://www.ncbi.nlm.nih.gov/pubmed/12805613?dopt=Abstract (Fleet etal 2003.)

  12. Beyond Pathway Views and Comparison ! Can I analyze my data live using the Pathway views?

  13. Transcriptome Data Light Dark Light Dark 0 4 8 12 16 20 24 28 32 36 40 44 Hierarchical clustering of Arabidopsis cycling genes mapping to metabolic pathways (1753 genes). Mean centered expression levels are represented with green denoting down regulation, and red indicating upregulation. (Filichkin et al 2011 PLoS One June 2011) -500 0 500

  14. OMICs Viewer: The Expression Viewer

  15. Your sample file with expression data(tab delimited text/data file) Columns: 0 1 2 3 4 5 6 7 8 9 10 11 12 Gene/locus IDs (preferred) can be replaced by gene symbols and synonyms . ---------------------------- If the data is from metabolomics, these IDs in column-0 is replaced with the compound name/ID

  16. OMICs Viewer

  17. Expression view on the cellular overview View data from Single data column OR Data from multiple experiments/timeline/-columns

  18. Expression views in Pathway tool and database (local installation)

  19. From Pathway to Gramene’ Shopping Cart (GrameneMart) !

  20. GrameneAn Alliance for Plant Biologists and Online Resources

  21. We value your contribution and feedback.Help us improve, innovate and integrate.

  22. From Pathway to Gramene’ Shopping Cart (GrameneMart) !

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