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Medinfo 2013 Copenhagen , Denmark Session: Data models and representations - II August 21, 2013. Exploring pharmacoepidemiologic groupings of drugs from a clinical perspective. Rainer Winnenburg , Olivier Bodenreider
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Medinfo 2013 Copenhagen, Denmark Session: Data models and representations - II August 21, 2013 Exploring pharmacoepidemiologicgroupingsof drugs from a clinical perspective Rainer Winnenburg, Olivier Bodenreider Lister Hill National Centerfor Biomedical CommunicationsBethesda, Maryland - USA
Motivation • Anatomical Therapeutic Chemical (ATC) classification • Used in pharmacoepidemiologic studies • Recently also used in applications from a clinical perspective • Assumes homogeneity of drug groups (in terms of therapeutic use, mechanism of action, physiologic effect) • BUT: “Substances classified in the same ATC fourth level cannot be considered pharmacotherapeuticallyequivalent since their mode of action, therapeutic effect, drug interactions and adverse drug reaction profile may differ.”(ATC documentation)
Objectives • To investigate the extent to which pharmacoepidemiologic groupings are homogeneous in terms of clinical properties • Pharmacoepidemiologicgroupings • ATC classification WHO • For comparison: Micromedex • Clinical properties • National Drug File-Reference Terminology (NDF-RT) • Homogeneity • Distribution of clinical properties of drugs within a grouping
Anatomical Therapeutic Chemical (ATC)drug classification • Hierarchical classification • Levels 1-4: drug groups (~ pharmacologic classes) • 1,255 drug group codes • Level 5: individual drugs • 4,464 drug codes (as of 2012)
National Drug File-Reference Terminology (NDF-RT) • Organized into several hierarchies • 7,162 active moieties (level = ingredient) • Relations to entities from other hierarchies • e.g., has_MoA relationships to mechanism of action hierarchy • We used NDF-RT API for • Mapping drug names from ATC to NDF-RT • Querying drug properties
Methods Overview • Mapping ATC drugs to ingredients in NDF-RT and acquiring clinical properties for ingredients • Computing homogeneity scores for each drug class based on properties of drugs in class • Comparison to the clinical reference Micromedex
Step 1 Mapping ATC drugs to clinical properties Eligibility ATC Drugs 5th level ATC Drugs (single ingredients within scope) • Exclude: • Multi-ingredient drugs • Radiopharmaceuticals • Unspecific, collective terms Prednisolone (R01AD02) Prednisolone (R01AD02) Lexical mapping and via RxNorm Relationships Clinical Properties (any of the 3 categories) NDF-RT Ingredients PREDNISOLONE (N0000146334)
Step 2 Computing homogeneity scores (classes) • Grouping Drugs ingrouping+ Clinical Properties 3 distinct properties HomogeneityScore How many distinct properties (or sets of properties) are necessary to account for at least 90% of the drugs in a given subgroup? • 1 property accounts for 2 drugs (66% of the drugs) • 2 properties account for all 3 drugs (>90% of the drugs) • => Homogeneity score = 2
Step 2 Homogeneity scores Examples Example 1: homogeneous group • ATC 4th level group Corticosteroids (R01AD) • 10 drugs • All 10 drugs have the same mechanism of action: Glucocorticoid Receptor Antagonists • One single property accounts for 100% of the drugs in this group => homogeneity score =1
Step 2 Homogeneity scores Examples Example 2: heterogeneous group • ATC 4th level group Antidotes (V03AB) • 12 drugs • 8 mechanism of action properties are needed to account for > 90% of the drugs in this group Siderophore Iron Chelating Activity, Cholinesterase Inhibitors, GABA B Antagonists, Free Radical Scavenging Activity, Alcohol Dehydrogenase Inhibitors, {Noncompetitive Opioid Antagonists, Competitive Opioid Antagonists}, {Adrenergic alpha1-Antagonists, Adrenergic alpha2-Antagonists}, and Cholinesterase Reactivators. => homogeneity score =8
Step 3 Comparison to a clinical reference • Clinical reference: drug groupings in Micromedex • Extracted from a drug-drug interaction system • Distribution of homogeneity scores (“profiles”) in ATC and Micromedex • 3 profiles • Therapeutic group • Mechanism of action • Physiologic effect • Hypothesis: if ATC is less homogeneous than Micromedex, it should have greater scores
53% of 2nd level groups in ATC have homogeneity score of 1 or 2 vs. 75% for Micromedex ATC therapeutic (2nd level) groups less homogeneous than groups in Micromedex Therapeutic group profile
> 60 % of 4th level groups in ATC have homogeneity score of 1 Homogeneity of ATC groups comparable to that of groups in Micromedex Profiles for mechanism of action (MoA) and physiologic effect (PE)
Limitations and future work • Only 50% of single drugs in ATC could be mapped to NDF-RT properties • Some drugs are out of scope, not marketed in the U.S. • Incompleteness of NDF-RT in terms of drug properties • No statistical methodology used for the comparison of homogeneity distributions • We plan to explore alternative drug information sources for evaluation of ATC • Only few reliable and publicly available (e.g., DrugBank) • Most are commercial products (e.g., First Databank)
Summary • Investigated homogeneity of pharmacoepidemiologicgroupings in terms of clinical properties • Mapped ATC 5th level drugs to NDF-RT properties • Based on these properties we computed homogeneity scores for all ATC groups and contrasted their distribution against the Micromedex reference • ATC classes are generally homogeneous in terms of clinical properties, especially mechanism of action and physiologic effect, less so for therapeutic use • Incomplete drug description in NDF-RT is a major issue
MedicalOntologyResearch Olivier Bodenreider Lister Hill National Centerfor Biomedical CommunicationsBethesda, Maryland - USA Contact: Web: olivier@nlm.nih.gov mor.nlm.nih.gov