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Sequence/Structure Alignment Resources from NCBI

Sequence/Structure Alignment Resources from NCBI. Steve Bryant Protein Data Bank Rutgers University November 19, 2005. Sequence / Structure Alignment Resources from NCBI…. … Structure look-up tools … Structure-structure alignments … Alignment tools in client software

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Sequence/Structure Alignment Resources from NCBI

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  1. Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

  2. Sequence / Structure Alignment Resources from NCBI… … Structure look-up tools … Structure-structure alignments … Alignment tools in client software … Conserved domain family alignments * … Domain subfamily analysis tools *

  3. Entrez Search Engine ...

  4. Entrez Retrieval System ... 1,500,000 users ... 60,000,000 hits ... … per day Term Frequency Statistics MEDLINE Abstracts BLAST Sequence Similarity Nucleotide Sequences Protein Sequences BLAST Sequence Similarity VAST Structure Similarity 3D Structures Protein Sequences

  5. Entrez Search Engine ...

  6. Protein Sequence Records ...

  7. PubMed Links ...

  8. PubMed Links ...

  9. Related Structure Links ...

  10. Related Structure Links ...

  11. Related Structure Link ...

  12. Related Structure Alignment ...

  13. Related Structure Alignment … Cn3D

  14. Related Structure Links ...

  15. Related Structure Link ...

  16. Structure Neighbors of 2A14 ...

  17. Structure Neighbor Alignment … Cn3D

  18. Align Target to Template … Cn3D

  19. Target-Template Alignment …

  20. Leptin Threading Prediction, 1995 …

  21. Threading Leptin 2005 … Cn3D

  22. Sequence / Structure Alignment Resources from NCBI… … Structure look-up tools … Structure-structure alignments … Alignment tools in client software … Conserved domain family alignments * … Domain subfamily analysis tools *

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