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生物資訊程式語言應用 Part 2

生物資訊程式語言應用 Part 2. HTML. Compiler / Interpreter. English. C++. Machine Code. Perl. Japanese. Chinese. Assembler. Machine Code. Principle of Programming. Interface with PC. Web Foundation. HTML, XML,. Client Side. Server Side. JavaScript VBScript DHTML Java Applets. CGI ASP

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生物資訊程式語言應用 Part 2

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  1. 生物資訊程式語言應用 Part 2 HTML

  2. Compiler / Interpreter English C++ Machine Code Perl Japanese Chinese Assembler Machine Code Principle of Programming • Interface with PC

  3. Web Foundation

  4. HTML, XML, ... Client Side Server Side JavaScript VBScript DHTML Java Applets CGI ASP Java Servlets World Wide Web • WWW comprises software (Web server and browser) and data (Web sites)

  5. HyperText Markup Language • Markup Language: to format text and information for display by a Web browser • Vs. C, C++: procedural language, for performing actions • Main Components of HTML • Tags • Text and information <p><font size="20">Bioinformatics</font></p> <p><strong>Bioinformatics</strong></p> <p><em>Bioinformatics</em></p> <blockquote> <p>Bioinformatics</p> </blockquote> <ol> <li>Bioinformatics</li> </ol> <ul> <li>Bioinformatics</li> </ul>

  6. Http protocol (HyperText Transfer Protocol) How HTML is Displayed Browser Command HTML URL:http://www.google.com HTML Display render Text & binary data

  7. HTML CGI ASP PHP … Browser Command URL:http://www.yahoo.com http request User http response How HTML is Displayed – from remote site HTML Display DB Remote Web Server Client Site

  8. How HTML is Displayed – from client site HTML Browser Command URL:c:\my_page.html User HTML Display Client Site

  9. HTTP: Hypertext Transfer Protocol • HTTP is behind every request for a web document or graph, every click of a hypertext link, and every submission of a form • HTTP specifies how clients request data, and how servers respond to these requests. See also, http://www.w3.org/Protocols/

  10. Why study HTTP ? • Understand the interaction between web clients (browsers, robots, search engines, etc.) and web servers. • Manually query web servers and receive low-level information that typical web browsers hide from the user. • can better understand the configuration and capabilities of a particular server • debug configuration errors with the server or programming errors in programs invoked by the web server. • Hacking ! • Streamline web services to make better use of the protocol.

  11. HTTP Transactions • Requests • Given the following URL: http://www.google.com:80/ the browser interprets the URL as follows: • http:// • Use HTTP, the Hypertext Transfer Protocol. • www.google.com • Contact a computer over the network with the hostname of www.google.com. • :80 • Connect to the computer at port 80. The port number can be any legitimate IP port number: 1 through 65535, • / • Anything after the hostname and optional port number is regarded as a document path. In this example, the document path is /.

  12. Tools • Server platform • Apache • Dynamic program • PHP • Database • MySQL • HTML editor • Macromedia Dreamweaver 8

  13. Introduction for Appserv • http://www.appservnetwork.com/ • AppServ 2.5.9 • Apache 2.2.4 • PHP 5.2.3 • MySQL 5.0.45 • phpMyAdmin-2.10.2 • http://vawidea.org/php%20bible/ • http://www.jollen.org/php/

  14. Mapping • c:\appserv\www\is the document of the apache server platform. • This document can map to then URL: • http://localhost/webpage/ c:\appserv\www\webpage\ • http://192.168.0.121/webpage/ • http://127.0.0.1/webpage/

  15. HTML file structure • <html> <head> <title>web page title</title> </head> <body>statement ……. </body></html> • Practice • Output: hello world! • http://localhost/html_practice/helloworld.html

  16. Introduce Dreamweaver 下拉式選單 標籤式版面 視覺化的面板群組 程式碼 網頁內容 屬性欄

  17. Hyperlink • <a href=" http://myweb.ncku.edu.tw/">NCKU</a> • <a href=" http://myweb.ncku.edu.tw/"><img src=“NCKU.gif></a> • http://tw.search.yahoo.com/search?p=P53 • http://www.google.com.tw/search?q=P53 • NCBI, EBI, Uniprot ….

  18. Practice • Link to NCBI by words. • Link to EBI by picture. • Link to UniProt by a part of the picture.

  19. Insert table

  20. Practice • 紅字,底線,藍底 • 藍字,粗體,紅底

  21. CSS(Cascading Style Sheet) • Focus on formatting and presenting information • Specifying the presentation of a Web page • Fonts, spacing, margins, … • Simplifying the maintenance and modifying cost of a document’s layout

  22. The style attribute specifies the style for an element. Some style properties are font-size and color. CSS Inline stylesheet

  23. Inline stylesheet output

  24. CSS • Inline stylesheet • Embedded stylesheet • <style type="text/css"><!--body{color: #000;}--></style> • Imported stylesheet • Linked stylesheet • You need to construct a CSS file first • <link rel=stylesheet type="text/css" href="style.css"> • Let us discuss the CSS by Dreamweaver!

  25. Practice • Firstly, you need to develop two CSS styles in css_practice.css . • style1 : 紅字,底線, 藍底 • style2 : 藍字,粗體,紅底 • Then, please to build a HTML file. • Lastly, you have to construct a table by using the two CSS styles

  26. Form

  27. Checkbox 籃球<input type=“checkbox” name=“favor1" value=“籃球"/> 網頁設計<input type=“checkbox” name=“favor2" value=“網頁設計"/> 看電影<input type=“checkbox” name=“favor3" value=“看電影"/> 聽音樂<input type=“checkbox” name=“favor4" value=“聽音樂"/> <input type=“submit” name=“submit” value=“送出" /> • You can get these strings when you checked the checkboxes. • favor1 =籃球 • favor2 =網頁設計 • favor3 =看電影 • favor4 =聽音樂 • Values will be transport to next page。

  28. Radiobox 男<input type=“radio” name=“sex” value=“男”/> 女<input type=“radio” name=“sex” value=“女”/> <input type="submit" name="submit" value="送出" /> • You can only choose one Radio in the same name group.

  29. Select/option • Select/option <select name=fruit> <option value=“1”>研究所</option> <option value=“2” selected>大學</option> <option value=“3”>高中</option> </select> <input type="submit" name="submit" value="送出" />

  30. Practice Input: Output: By PHP, Perl or ASP… 30

  31. Frames Page

  32. Free template • Free website download | Open Source web design • http://www.templateworkz.com/ • http://www.freelayouts.com/templates/display/templates/ • http://www.templatesweb.com/free_templates/index.htm • http://www.mastertemplates.com/

  33. phpMyAdmin & MySQL

  34. phpMyAdmin & MySQL (con.) database You can create a database here.

  35. Insert table Tool bar Table structure table Create table

  36. Insert table(con.) attribute

  37. Insert table(con.) SQL Structure view

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