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PopSciGrid 2.0 Phase II

PopSciGrid 2.0 Phase II. Paul Courtney. Policy Planning. Decision Support. Application Layer. Grid layer, Ontology Development. Data Sources. Visualization. Discovery. Fusion. State & local consortia. Federal Surveillance. Clinical Centers. University. Grid Comm. Protocol.

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PopSciGrid 2.0 Phase II

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  1. PopSciGrid 2.0Phase II Paul Courtney

  2. Policy Planning Decision Support Application Layer Grid layer, Ontology Development Data Sources Visualization Discovery Fusion State & local consortia Federal Surveillance Clinical Centers University Grid Comm. Protocol Metadata, service registry Tobacco Taking a Slice… 1.0 Application layer GRID infrastructure CDEs, vocabularies, metadata Consortium in Abbas, A. (2004): Grid Computing: A Practical Guide to Technology and Applications. Hingham, MA: Charles Hingham (p. 319).

  3. 1.0 . • Proof of concept for CI in population health and cancer control • Use state-of-the-science technology to link data, researchers, and resources

  4. . 1.0 • 14 datasets spanning 6 years • Real-time access/analysis of public health and economic data • Prospective geo-spatial analytics • Linkages to GEM repository

  5. 1.0 . Challenges (not just technology related) • Collaboration • Within and across disciplines • Privacy, de-identification, and data ownership • Data Harmonization • Standardize data collection • Different national surveys, codebooks, and datasets • Different measures/instruments for same phenomena • Legacy datasets

  6. PopSciGrid 2.0 Phase II Goals Given the broad developments leading up to now, asked ourselves, “How might we enhance the framework developed for PopSciGrid 1.0 to support future funded research centered on the formation of community portals designed to leverage existing data to effect change on a community level?” • Enhance the analytic and data visualization capabilities that were demonstrated in PopSciGrid 1.0 • Incorporate emerging Semantic Web tools and technologies to augment the caBIG® technologies and infrastructure • The target audience for this phase includes nonprofit organizations, advocacy groups, public health professionals, civic leaders and citizens. This audience is congruous with the communities identified in the CHDI. • The web-based application that will be developed in this project will be the Community Health Portal. Enable the measurement of a community level intervention into community health.

  7. Data Sources Proposed • The American Lung Assn’s State of Tobacco Control • Cancer Control PLANET • State Cancer Profiles from SRP that does not include tobacco data, but cancer incidence and mortality.   • NCI’s 2006 Annual Report to the Nation with the focus on lung cancer; trend graphs for lung cancer deaths rates among men and women comparing states with the highest smoking prevalence (Kentucky) to the states with the lowest (Utah and CA). • State tobacco control funding – info available from CDC • Clean indoor air (policy) – info available from ANR (Americans for nonsmokers rights) • Medicaid spending • Quitline spending • Insurance coverage • Robert Wood Johnson’s site (http://www.rwjf.org) • Tobacco tax data

  8. Framework Widgets Application Layer(e.g., Enhanced disease modeling, dashboards, data widgets…) Grid Cyberinfrastructure Common Vocabularies(Shared ontologies, common data elements) • Biomedical • Biological • Genomic/proteomic • Public Surveillance • BRFSS • HINTS • NHIS • Tax • US Census,... • Grantees • CECCRS • CPHHD • GEI • TREC • TTURCS • Community/Contextual • ‘Community health labs’ • GIS (geo-spatial data) • Physical/Built environment • Real-time data capture • Clinical/Health System • CRN • caBIG PopSci SIG • QCCC projects • Registries (SEER) Slide courtesy Brad Hesse, 2009

  9. What has been done to help? • Engagement with Tetherless World Constellation – Semantic Web • Milestones set up • Re-conceptualizing how surveys are modeled

  10. Semantic Web

  11. Semantic Web tools

  12. Tetherless World • http://data-gov.tw.rpi.edu/demo/stable/demo-10040-broadband-home.html • http://data-gov.tw.rpi.edu/demo/exhibit/demo-8-castnet.php

  13. Tetherless World

  14. Tetherless World

  15. Milestones • caBIG® Annual Meeting, September 13-15, 2010 • APHA Annual Meeting, November 6-10, 2010 • HICSS-44, January 4-7, 2011 • NSF Cyberinfrastructure and Behavioral Medicine, January (after the HICSS-44 conference)

  16. Evolution of HINTS model

  17. Questions? • Contact information: Paul K. Courtney SAIC-Frederick, Inc. Support to Division of Cancer Control and Population Sciences courtneypk@mail.nih.gov

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