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Example 1 (simulation case)

Example 1 (simulation case). Step 1: Choose analysis platform choose "single channel" Step 2: Define RILs x genotypes send genotype data (.TXT ) to R In R we may use this command to get the data : genotype <-read.table("g3d/data/genotype_example.txt"). Example 1 (cont.).

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Example 1 (simulation case)

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  1. Example 1 (simulation case) • Step 1: Choose analysis platform choose "single channel" • Step 2: Define RILs x genotypes send genotype data (.TXT ) to R In R we may use this command to get the data : genotype <-read.table("g3d/data/genotype_example.txt")

  2. Example 1 (cont.) • Step3: Define experimental factors Factor 1: TempCelsius 1, 2,3,4,5 (5 levels) Factor 2: Ni 0.5, 1, 1.5, 2 (5 levels) • Step 4: Define experimental factors Number of RILs per condition: 4

  3. Example 2 • Step 1 and 2 is the same as example 1 • Step 3: Define experimental factors Factor1: TempCelsius 15, 24, 29 (3 levels) Factor 2: Ni, 1,2,3,4 (4 levels) • Step 4: Define experimental factors Number of RILs per condition: 4.44

  4. Example 3 • Step 1 and 2 is the same as example 1 • Step3: Define experimental factors Factor1: TempCelsius 15, 24, 29,32,36 Factor 2: Ni, 1,2,3,4,5 Factor 3: CHL, 10,11,12,13,14 • Step 3 define experimental factors Number of RILs per condition: 2

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