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Lecture 2: (by Jack Szostak) What is life? Life as a chemical system. Earth life - basic biochemistry Inheritance Enzymes and metabolism Energy. Life’s machinery in a cell. A bacterial cell: RNA molecules transcribe messages from DNA
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Lecture 2: (by Jack Szostak) What is life?Life as a chemical system Earth life - basic biochemistry Inheritance Enzymes and metabolism Energy
Life’s machinery in a cell A bacterial cell: RNA molecules transcribe messages from DNA that are used to produce protein molecules inside ribosomes.
Earth life - main attributes: 1) life is chemical in essence; an ordered network of chemical reactions; 2) life is energy dissipating; out-of-equilibrium system; 3) life is compartmentalized; 4) life is adaptive, self-optimizing, fed back, forward; stable to perturbations; 5) life uses molecules that are suited to water.
Organizational Complexity of Modern Life DNA replication RNA processing proteins processing Structure and function
An earlier, simpler time: RNA biochemical functions
Between non-life and life… Viruses Protocells Self-replicating nucleic acids
What do we know about the Origin of Life? From G.F. Joyce, 2002, Nature 418: 214-221
From Chemistry to Biology? small molecules (CO, H2, H20, NH3, CH4…) + energy cofactors lipids + sugars + nucleobases + high-energy + amino acids compounds activated nucleotides peptides Self-assembly into vesicles Assembly into genetic polymer protocell?
Model of Simple Protocell Matter and Energy Fluxes The simplest protocell requires a membrane for compartmentalization, a replicating genome, and a source of nucleotides and lipids. Mechanical energy (for division), chemical energy (for nucleotide activation), and possibly osmotic gradient energy (for growth) may be used by the system.
The RNA World: Pre-biotic RNA formation Janet Iwasa/ Szostak Lab
The RNA World: Formation of Vesicles Janet Iwasa/ Szostak Lab
Why life needs a membrane compartment Janet Iwasa/ Szostak Lab
The RNA World: Protocell life cycle & division Janet Iwasa/ Szostak Lab
Lipid bilayer vesicles in clay RNA (red) adsorbed into clay, inside a vesicle (green) - Szostak lab (2004).
Earth life - main attributes: 1. life is chemical in essence; an ordered network of chemical reactions; 2. life is energy dissipating; out-of-equilibrium system; 3. life is compartmentalized; 4. life evolves by natural selection and inheritance of variation 5. life evolves to be adaptive, self-optimizing, fed back, forward; stable to perturbations; 6. Earth life uses molecules that are suited to water.