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pPOD

pPOD. CDM. Character Matrix. Matrix label:String description:String otuSet:OTUSet otus:OTU [] otuIdx:Map < OTU,int > phyloChars:PhyloChar [] phyloCharIdx:Map < PhyloChar,int > rows:Row [] pPodVersion:long. OTUSet label:String d escription:String matrices:Matrix [] otus:OTU []

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pPOD

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  1. pPOD CDM

  2. Character Matrix Matrix label:String description:String otuSet:OTUSet otus:OTU [] otuIdx:Map<OTU,int> phyloChars:PhyloChar[] phyloCharIdx:Map<PhyloChar,int> rows:Row[] pPodVersion:long OTUSet label:String description:String matrices:Matrix[] otus:OTU[] pPodVersion:long PhyloChar label:String matrices:Matrix[] phyloCharStates :Map<int,PhyloCharState> properties :Map<String,String> pPodVersion:long 0..* * 0..* * OTU label:String matrices:Matrix[] otus:OTU[] pPodVersion:long * Row cells:Cell[] matrix:Matrix cells:List<Cell> cellIdx:Map<Cell,int> pPodVersion:long * PhyloCharState label:String state:long phyloChar:PhyloChar * * * Cell metaState:Enum{ASSIGNED,UNASSIGNED,INAPPLICABLE} uncertain:bool phyloCharStates:Set<PhyloChar> row:Row pPodVersion:long

  3. Tree Set TreeSet label:String description:String trees:Tree[] otus:OTU[] otuIdx:Map<int,Cell> otuSet:Set<OTU> OTUSet label:String description:String matrices:Matrix[] otus:OTU[] pPodVersion:long * 0..* * * * * OTU label:String matrices:Matrix[] otus:OTU[] pPodVersion:long Tree label:String newick:String treeSets:Set<TreeSet>

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