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Protein Secondary Structure Prediction

Protein Secondary Structure Prediction

Protein Secondary Structure Prediction. G P S Raghava. Protein Structure Prediction. Importance CASP Competition What is secondary structure Assignment of secondary structure (SS) Type of SS prediction methods Description of various methods Role of multiple sequence alignment/profiles

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420 views • 35 slides
Protein Structure Prediction

Protein Structure Prediction

Protein Structure Prediction. (Lecture for CS397-CXZ Algorithms in Bioinformatics) April 23, 2004 ChengXiang Zhai Department of Computer Science University of Illinois, Urbana-Champaign. Topics in Bioinformatics. Function (Protein). Gene (DNA). Gene expression & regulation.

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1.82k views • 32 slides
Sequence analysis

Sequence analysis

Sequence analysis. June 17, 2003 Learning objectives-Review amino acids structures. Understand sliding window programs. Understand difference between identity, similarity and homology. Understand difference between global alignment and local alignment.

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428 views • 30 slides
A Hidden Markov Model for Protein Secondary Structure Prediction

A Hidden Markov Model for Protein Secondary Structure Prediction

A Hidden Markov Model for Protein Secondary Structure Prediction. Wei-Mou Zheng Institute of Theoretical Physics Academia Sinica PO Box 2735, Beijing 100080 zheng@itp.ac.cn. Outline. Protein structure A brief review of secondary structure prediction Hidden Markov model: simple-minded

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422 views • 17 slides
Secondary Structure Prediction

Secondary Structure Prediction

Secondary Structure Prediction. Progressive improvement Chou-Fasman rules Qian-Sejnowski Burkhard-Rost PHD Riis-Krogh Chou-Fasman rules Based on statistical analysis of residue frequencies in different kinds of secondary structure Useful, but of limited accuracy. Qian-Sejnowski.

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309 views • 16 slides
Secondary Structure Prediction

Secondary Structure Prediction

Secondary Structure Prediction. Progressive improvement Chou-Fasman rules Qian-Sejnowski Burkhard-Rost PHD Riis-Krogh Chou-Fasman rules Based on statistical analysis of residue frequencies in different kinds of secondary structure Useful, but of limited accuracy. Qian-Sejnowski.

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288 views • 16 slides

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