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BLAST, PSI-BLAST and position-specific scoring matrices

BLAST, PSI-BLAST and position-specific scoring matrices. Prof. William Stafford Noble Department of Genome Sciences Department of Computer Science and Engineering University of Washington thabangh@gmail.com. Outline. Responses from last class Revision BLAST PSI-BLAST

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CSE 373: Data Structures and Algorithms

CSE 373: Data Structures and Algorithms. Lecture 5: Math Review/Asymptotic Analysis III. Growth rate t erminology. T(N) = O(f(N )) f(N ) is an upper bound on T(N) T(N) grows no faster than f(N ) T(N) = ? (g(N )) g(N ) is a lower bound on T(N)

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Constant number c - PowerPoint PPT Presentation

BLAST, PSI-BLAST and position-specific scoring matrices

CSE 373: Data Structures and Algorithms