'Database sequences' presentation slideshows

General nucleic acid Sequence databases

General nucleic acid Sequence databases. EMBL :(European Molecular Biology Laboratory) http://www.ebi.ac.uk/Information/ GenBank : NCBI (National Center for Biotechnology Information) http://www.ncbi.nlm.nih.gov/ DDBJ : DNA Data Bank of Japan

1.98k views • 142 slides

Iosif Vaisman

Introduction to Bioinformatics. Iosif Vaisman. Email: ivaisman@gmu.edu. NIH working definition of bioinformatics and computational biology (July 2000).

970 views • 75 slides

Searching Molecular Databases with BLAST

Searching Molecular Databases with BLAST. Searching Molecular Databases with BLAST. B asic L ocal A lignment S earch T ool How BLAST works Interpreting search results The NCBI Web BLAST interface Demonstration and exercises. Why learn sequence database searching?. What have I cloned ?

1.07k views • 54 slides

Practical algorithms in Sequence Alignment

Practical algorithms in Sequence Alignment. Sushmita Roy BMI/CS 576 www.biostat.wisc.edu/bmi576/ sroy@biostat.wisc.edu Sep 16 th , 2014. Key concepts. Assessing the significance of an alignment Extreme value distribution gives an analytical form to compute the significance of a score

435 views • 28 slides

Alignments and phylogeny Peter Hantz EMBL Heidelberg

Alignments and phylogeny Peter Hantz EMBL Heidelberg. Evolution. Mutations: changes in the DNA sequence chemicals, physical conditions, replication errors (cca 10/replication/human genome) coding region mutations: >silent results in the same AA > mis-sense

346 views • 26 slides

Heuristic Methods for Sequence Database Searching

Heuristic Methods for Sequence Database Searching. BMI/CS 576 www.biostat.wisc.edu/bmi576/ Colin Dewey cdewey@biostat.wisc.edu Fall 2010. query. database. www.ncbi.nlm.nih.gov/BLAST/. BLAST Results. BLAST Programs. Heuristic Alignment Motivation.

407 views • 23 slides

A Web-based Tool for Visual Identification of Novel Genes

BLAST. PAN. A Web-based Tool for Visual Identification of Novel Genes. CENTRAL DOGMA OF LIFE. transcription. translation. DNA. RNA. PROTEIN. GENETIC CODE. DNA. ACGCCAACCAGCACCA T GCCCATGATACTGGGGTACTGG. RNA. ACGCCAACCAGCACCA U GCCCAUGA U AC U GGGGUAC U GG. PROTEIN.

347 views • 23 slides

BLAST addendum

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BLAST addendum

116 views • 4 slides

A Web-based Tool for Visual Identification of Novel Genes

C omputer S cience. Department of. G S H K I L A R. G S H K I L A R. : : : : . : . :. : : : . : . :. G S H K V L G R. G W H K V L G R. ACGCCAACCAGCACCA. T. GCCCATGATACTGGGGTACTGG. FASTA/BLAST. FASTA/BLAST. FASTA/BLAST. FASTA/BLAST. transcription. translation. T. A.

171 views • 1 slides