'Encode regions' presentation slideshows

Advanced Bioinformatics, chsl, october 2005

478 views • 47 slides

Advanced Bioinformatics, chsl, october 2005

490 views • 47 slides

Authors: Lan Liu , Yonghui Wu,

E fficient A lgorithms for G enome-wide T agSNP S election across P opulations via the Linkage Disequilibrium C riterion. Authors: Lan Liu , Yonghui Wu,. Stefano Lonardi and Tao Jiang. Outline. Introduction The MCTS Model Our Algorithms Experimental Result. Outline. Introduction

384 views • 23 slides

Comparison of array detected transcription map with GENCODE/HAVANA annotations in ENCODE regions

Comparison of array detected transcription map with GENCODE/HAVANA annotations in ENCODE regions. Acknowledgements. AFFX Transcriptome Group Computation M olecular Biology S. Bekiranov P. Kapranov S. Brubaker I. Bell J. Cheng J. Drenkow

361 views • 22 slides

Fprom promoter predictions

Fprom promoter predictions. Victor Solovyev & Igor Seledtsov Royal Holloway College, University of London Softberry Inc. Results of promoter search on genes with known mRNAs by different promoter-finding programs. Reproduced from Liu and States (2002) Genome Research 12:462-469.

458 views • 19 slides

The HapMap Project and Haploview

The HapMap Project and Haploview. David Evans Ben Neale University of Oxford Wellcome Trust Centre for Human Genetics. Human Haplotype Map. General Idea : C haracterize the distribution of Linkage Disequilibrium across the genome.

398 views • 16 slides

Encode variation analysis

Encode variation analysis. Analysis goals. Quantify genetic variation in ENCODE regions Detect selective constraint in ENCODE features Develop rules for interpretation of functional variation Motivate experiments to test functional variation. Data. Encode SNPs (HapMap resequencing)

327 views • 15 slides

Breakdown of 244 total (Yale+Vega) Pseudogenes Amongst Various ENCODE Regions

Breakdown of 244 total (Yale+Vega) Pseudogenes Amongst Various ENCODE Regions. r 2 =0.35. No. of Pseudogenes. No. of Genes. Manual. Random. 211 Yale, 178 Vega, Union is 244 More pseudogenes in the manually picked regions.

210 views • 11 slides