'Eulerian path' presentation slideshows

Graphs and Graph Theory in Computational Biology

Graphs and Graph Theory in Computational Biology. Dan Gusfield Miami University, May 15, 2008 (four hour tutorial) . Some examples of graphs in biology. Taken from the web - see the citations for details. Many other examples of graphs more complex than trees in biology.

1.82k views • 137 slides

Graphs and Graph Theory in Computational Biology

Graphs and Graph Theory in Computational Biology. Dan Gusfield Miami University, May 15, 2008 (four hour tutorial) . Some examples of graphs in biology. Taken from the web - see the citations for details. Many other examples of graphs more complex than trees in biology.

1.68k views • 137 slides

656 views • 48 slides

Sequence Assembly

Sequence Assembly. BMI/CS 576 Fall 2010 Colin Dewey. The sequencing problem. We want to determine the identity of the base pairs that make up: A single large molecule of DNA The genome of a single cell/individual organism The genome of a species

1.09k views • 42 slides

DNA Sequencing

DNA Sequencing. (Lecture for CS498-CXZ Algorithms in Bioinformatics) Sept. 8, 2005 ChengXiang Zhai Department of Computer Science University of Illinois, Urbana-Champaign. Outline. The Basic Shotgun Sequencing Strategy The shortest superstring problem Graph algorithms

890 views • 40 slides

DNA Sequencing

DNA Sequencing. (Lecture for CS498-CXZ Algorithms in Bioinformatics) Sept. 8, 2005 ChengXiang Zhai Department of Computer Science University of Illinois, Urbana-Champaign. Many slides are taken/adapted from http://www.bioalgorithms.info/slides.htm. Outline.

536 views • 40 slides

Introduction to Graphs

616 views • 38 slides

Bioinformatics PhD. Course

Bioinformatics PhD. Course. Summary (approximate). 1. Biological introduction. 2. Comparison of short sequences (<10.000 bps). 3 Comparison of large sequences (up to 250 000 000). 4 Sequence assembly. 5 Efficient data search structures and algorithms. 6 Proteins.

494 views • 34 slides

Game Theory, Social Networks, and Going Viral

402 views • 33 slides

Genome sequence assembly

Genome sequence assembly. Assembly concepts and methods (some slides courtesy of Mihai Pop). Building a library. Break DNA into random fragments (8-10x coverage). Actual situation. Building a library. Break DNA into random fragments (8-10x coverage) Sequence the ends of the fragments

650 views • 33 slides

Graph Theory And Bioinformatics Jason Wengert

Graph Theory And Bioinformatics Jason Wengert. Outline. Introduction to Graphs Eulerian Paths & Hamiltonian Cycles Interval Graph & Shape of Genes Sequencing DNA Shortest Superstring Problem Sequencing by Hybridization (SBH) SBH as Hamiltonian Cycle Problem SBH as Eulerian Path Problem.

626 views • 33 slides

Algorismes de cerca

506 views • 31 slides

String Matching

String Matching. String matching: definition of the problem (text,pattern). depends on what we have: text or patterns. Exact matching:. The patterns ---> Data structures for the patterns. 1 pattern ---> The algorithm depends on |p| and | ?|. Regular Expressions. Extensions.

498 views • 29 slides

Lecture 5: Mathematics of Networks (Cont)

Lecture 5: Mathematics of Networks (Cont). CS 790g: Complex Networks. Slides are modified from Networks: Theory and Application by Lada Adamic. Characterizing networks: How far apart are things?. Network metrics: paths.

519 views • 27 slides

Tutorial 5 of CSCI2110 Eulerian Path & Hamiltonian Cycle

569 views • 27 slides

Members: Eishita Tyagi Sandeep Namburi Aarthi Talla Vinay Vyas Amin Momin Jay Humphrey

Members: Eishita Tyagi Sandeep Namburi Aarthi Talla Vinay Vyas Amin Momin Jay Humphrey. COMPUTATIONAL GENOMICS GENOME ASSEMBLY. Contents. Assembly De novo Algorithms Involved Reference Assembly problems Task and Strategy. How do we get Reads?. De novo Assembly. Reads.

425 views • 26 slides

DNA sequencing

DNA sequencing. There are two techniques:. Hibridization: provide information about l-tuples present in DNA. Shotgun: DNA sequences are broken into 100Kb-500Kb random fragments. DNA sequencing. There are two techniques:. Hibridization: provide information about l-mers

266 views • 26 slides

361 views • 22 slides

De Novo Genome Assembly Using vSMP

De Novo Genome Assembly Using vSMP. Wayne Pfeiffer (SDSC/UCSD) August 10, 2011. Goal: determine the DNA sequence of the chromosomes that make up a genome. Background Chromosomes consist of two long DNA molecules in a double helix

482 views • 18 slides

Graph Theory Aiding DNA Fragment Assembly

Jonathan Kaptcianos e-mail: jkaptcianos@smcvt.edu advisor: Professor Jo Ellis-Monaghan. Graph Theory Aiding DNA Fragment Assembly. Work supported by the Vermont Genetics Network through NIH Grant Number P20 RR16462 from the INBR program of the National Center for Research Resources.

266 views • 14 slides