'Generalized suffix tree' presentation slideshows

Suffix trees

Suffix trees. Trie. A tree representing a set of strings. c. a. { aeef ad bbfe bbfg c }. b. e. b. d. e. f. c. f. e. g. Trie (Cont). Assume no string is a prefix of another. c. Each edge is labeled by a letter,

1.17k views • 116 slides

Suffix trees

Suffix trees. Trie. A tree representing a set of strings. c. a. { aeef ad bbfe bbfg c }. b. e. b. d. e. f. c. f. e. g. Trie (Cont). Assume no string is a prefix of another. c. Each edge is labeled by a letter,

1.32k views • 113 slides

Bioinformatics PhD. Course

Bioinformatics PhD. Course. Summary (approximate). 1. Biological introduction. 2. Comparison of short sequences (<10.000 bps). 3 Comparison of large sequences (up to 250 000 000). 4 Sequence assembly. 5 Efficient data search structures and algorithms. 6 Proteins.

747 views • 62 slides

MicroRNA

1.17k views • 53 slides

Construction of Aho Corasick automaton in Linear time for Integer Alphabets

Construction of Aho Corasick automaton in Linear time for Integer Alphabets. Shiri Dori & Gad M. Landau University of Haifa. Overview. Classic Aho Corasick Our algorithm Goto Function Failure Function Combining the two Queries in O(m log| ? |). Set Pattern Matching Problem.

745 views • 33 slides