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Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction

Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction

Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction. Hong, Lippow, Tidor, Lozano-Perez. JCC. 2008. Presented by Kyle Roberts. Problem Statement. Protein structure prediction Homology modeling Side-chain placement Protein design problems

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557 views • 44 slides
Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction

Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction

Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction. Hong, Lippow, Tidor, Lozano-Perez. JCC. 2008. Presented by Kyle Roberts. Problem Statement. Protein structure prediction Homology modeling Side-chain placement Protein design problems

★ ★ ★ ★ ★

595 views • 44 slides
Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction

Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction

Rotamer Optimization for Protein Design through MAP estimation and problem-Size Reduction. Hong, Lippow, Tidor, Lozano-Perez. JCC. 2008. Presented by Kyle Roberts. Problem Statement. Protein structure prediction Homology modeling Side-chain placement Protein design problems

★ ★ ★ ★ ★

459 views • 44 slides
Max-Sum Exact Inference

Max-Sum Exact Inference

Inference. Probabilistic Graphical Models. MAP. Max-Sum Exact Inference. Product ? Summation. E. A. B. C. D. Max-Sum Elimination in Chains. X. Factor Summation. Factor Maximization. E. A. B. C. D. Max-Sum Elimination in Chains. X. X. E. A. B. C. D.

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264 views • 17 slides

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