'Metagenomic data' presentation slideshows

Sourav Chatterji UC Davis Genome Center schatterji@ucdavis

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Sourav Chatterji UC Davis Genome Center schatterji@ucdavis

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CompostBin : A DNA composition based metagenomic binning algorithm

CompostBin : A DNA composition based metagenomic binning algorithm. Sourav Chatterji * , Ichitaro Yamazaki, Zhaojun Bai and Jonathan Eisen UC Davis schatterji@ucdavis.edu. Overview of Talk. Metagenomics and the binning problem. CompostBin. The Microbial World.

523 views • 33 slides

The Emerging Global Community of Microbial Metagenomics Researchers

The Emerging Global Community of Microbial Metagenomics Researchers. Opening Talk Metagenomics 2007 Calit2@UCSD July 11, 2007. Dr. Larry Smarr Director, California Institute for Telecommunications and Information Technology Harry E. Gruber Professor,

480 views • 30 slides

Microbial Genome Assembly and Finishing Alla Lapidus, Ph.D. Microbial genomics

Microbial Genome Assembly and Finishing Alla Lapidus, Ph.D. Microbial genomics DOE Joint Genome Institute, Walnut Creek, CA. A typical Microbial project. Assembly. Base calling. Quality screening. Vector screening. Sequencing. Annotation. Auto-assembly. Contigs. Public release.

402 views • 20 slides

C A M E R A A Metagenomics Resource for Marine Microbial Ecology

C A M E R A A Metagenomics Resource for Marine Microbial Ecology. July 27, 2007 Paul Gilna UCSD/Calit2 Saul A. Kravitz J. Craig Venter Institute. Acknowledgements. UCSD/Calit2 Larry Smarr, PI; Paul Gilna, Executive Director Phil Papadopoulos, Technical Lead Weizhong Li JCVI

541 views • 19 slides

361 views • 19 slides

IMG/M and metagenome analysis

IMG/M and metagenome analysis. Natalia Ivanova. MGM Workshop February 5, 2009. Problems of metagenomic data IMG/M features Analysing metagenomic data: flowcharts. Outline. Problems of metagenomic data (metagenomic data is the problem) (see IMG/M -> Using IMG/M -> About IMG/M

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Discussion on Metagenomic Data for ANGUS Course

Discussion on Metagenomic Data for ANGUS Course. Adina Howe. What I do with my sequencing data. Compare it to known references (BLAST, alignment mapping, HMMs) Database gaps, 50%+ in soil metagenomes unknown Annotation errors Assembly (site specific reference)

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