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Multiple secondary structure elements - PowerPoint PPT Presentation

Structural databases

Structural databases. Lecture 5 Structural Bioinformatics Dr. Avraham Samson 81-871. Protein Data Bank (PDB). PDB. Is protein universe space infinite?. http://www.rcsb.org/pdb/static.do?p=general_information/pdb_statistics. Data access. RCSB PDB http://www.rcsb.org

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Classification and comparison of protein structures Cordes, Bioc 565, Sep 22 2008

Classification and comparison of protein structures Cordes, Bioc 565, Sep 22 2008. Overview Domains as the fundamental unit of classification Major structural classification systems-CATH, SCOP and DALI/FSSP What classification tells us: -- convergence to a common structure?

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Protein structures in the PDB

Protein structures in the PDB. Domains. proteins can be modular single chain may be divisible into smaller independent units of tertiary structure called domains domains are the basic unit of structure classification

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Multiple secondary structure elements - PowerPoint PPT Presentation

Structural databases

Classification and comparison of protein structures Cordes, Bioc 565, Sep 22 2008

Protein structures in the PDB