'Parsimony score' presentation slideshows

Phylogenetic Analysis

1.22k views • 96 slides

Comparative genomics to identify DNA binding motifs

Comparative genomics to identify DNA binding motifs. Saurabh Sinha Dept. of Computer Science University of Illinois, Urbana-Champaign. Outline. Binding sites and motifs The motif finding problem in one species Comparative genomics and alignment

869 views • 70 slides

Comparative genomics to identify DNA binding motifs

Comparative genomics to identify DNA binding motifs. Saurabh Sinha Dept. of Computer Science University of Illinois, Urbana-Champaign. Outline. Binding sites and motifs The motif finding problem in one species Comparative genomics and alignment

962 views • 70 slides

Lecture 21: Imperfect Tree Construction

657 views • 48 slides

Phylogenetic Trees (2) Lecture 13

Phylogenetic Trees (2) Lecture 13. Based on: Durbin et al 7.4, Gusfield 17.1-17.3, Setubal&Meidanis 6.1. Character-based methods for constructing phylogenies.

595 views • 41 slides

Phylogenetic Trees (2) Lecture 13

Phylogenetic Trees (2) Lecture 13. Based on: Durbin et al 7.4, Gusfield 17.1-17.3, Setubal&Meidanis 6.1. Character-based methods for constructing phylogenies.

597 views • 39 slides

Character-Based Phylogeny Reconstruction

Character-Based Phylogeny Reconstruction. Tanya Berger-Wolf CS502: Algorithms in Computational Biology February 28, 2017. Character-based methods for constructing phylogenies.

332 views • 31 slides

Phylogenetic Trees (2) Lecture 13

Phylogenetic Trees (2) Lecture 13. Based on: Durbin et al 7.4, Gusfield 17.1-17.3, Setubal&Meidanis 6.1. Ultrametric trees as special weighted trees. Definition: An Ultrametric tree is a rooted weighted tree all of whose leaves are at the same depth.

400 views • 30 slides

Discovery of Regulatory Elements by a Phylogenetic Footprinting Algorithm

Discovery of Regulatory Elements by a Phylogenetic Footprinting Algorithm. Mathieu Blanchette Shane Neph Martin Tompa Computer Science & Engineering University of Washington. Outline. How are genes regulated? What is phylogenetic footprinting? First solution Improvements and extensions

489 views • 24 slides

Discovery of Regulatory Elements by a Phylogenetic Footprinting Algorithm

Discovery of Regulatory Elements by a Phylogenetic Footprinting Algorithm. Mathieu Blanchette Martin Tompa Computer Science & Engineering University of Washington. Outline. How are genes regulated? What is phylogenetic footprinting? First solution Improvements and extensions

442 views • 23 slides

Journal club 06/27/08

Journal club 06/27/08. Phylogenetic footprinting. A technique used to identify TFBS within a non-coding region of DNA of interest by comparing it to the orthologous sequences in different species (1988 by Tagle)

293 views • 19 slides

Phylogenetic Trees - Parsimony Tutorial #12

438 views • 14 slides

UPGMA and FM are distance based methods . UPGMA enforces the Molecular Clock Assumption.

UPGMA and FM are distance based methods . UPGMA enforces the Molecular Clock Assumption. FM (Fitch-Margoliash) relieves that restriction, but still enforces the idea that the clades should include the entities that are closest to each other.

117 views • 9 slides