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Short Read Mapping On Post Genomics Datasets

Short Read Mapping On Post Genomics Datasets

Short Read Mapping On Post Genomics Datasets. Adapted from Langmead Trapnell, Pop, Salzberg. Cedric Notredame. DATA. The Data: FASTQ. Data SAM. The Data: BAM. The Data: SAM/BAM. SAM/BAM Tools. SAM/BAM: Visualization. SAM/BAM: Visualization. SHORT READS. Short Read Applications.

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919 views • 91 slides
Short Read Mapping On Post Genomics Datasets

Short Read Mapping On Post Genomics Datasets

Short Read Mapping On Post Genomics Datasets. Adapted from Langmead Trapnell, Pop, Salzberg. Cedric Notredame. DATA. The Data: FASTQ. The Data: CSFASTQ (ABI). Data SAM. The Data: BAM. The Data: SAM/BAM. SAM/BAM Tools. SAM/BAM: Visualization. SAM/BAM: Visualization. SHORT READS.

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1.01k views • 75 slides
Short Read Mapping On Post Genomics Datasets

Short Read Mapping On Post Genomics Datasets

Short Read Mapping On Post Genomics Datasets. Adapted from Langmead Trapnell, Pop, Salzberg. Cedric Notredame. DATA. The Data: FASTQ. The Data: CSFASTQ (ABI). Data SAM. The Data: BAM. The Data: SAM/BAM. SAM/BAM Tools. SAM/BAM: Visualization. SAM/BAM: Visualization. SHORT READS.

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760 views • 75 slides
Lecture 5. Sequence Assembly

Lecture 5. Sequence Assembly

Lecture 5. Sequence Assembly. The Chinese University of Hong Kong CSCI3220 Algorithms for Bioinformatics. Lecture outline. The sequence assembly problem Several general approaches Related graph problems Hamiltonian path Eulerian path Sequence assembly by using de Bruijn graphs. Part 1.

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562 views • 55 slides
Lecture 5. Sequence Assembly

Lecture 5. Sequence Assembly

Lecture 5. Sequence Assembly. The Chinese University of Hong Kong CSCI3220 Algorithms for Bioinformatics. Lecture outline. The sequence assembly problem Several general approaches Related graph problems Hamiltonian path Eulerian path Sequence assembly by using de Bruijn graphs. Part 1.

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621 views • 46 slides
CS 6293 Advanced Topics: Translational Bioinformatics

CS 6293 Advanced Topics: Translational Bioinformatics

CS 6293 Advanced Topics: Translational Bioinformatics. Next-generation sequencing - Mapping short reads. Short read mapping. Input: A reference genome A collection of many 25-100bp tags (reads) User-specified parameters Output: One or more genomic coordinates for each tag

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394 views • 25 slides
CS 5263 & CS 4593 Bioinformatics

CS 5263 & CS 4593 Bioinformatics

CS 5263 & CS 4593 Bioinformatics. Next-generation sequencing - Mapping short reads. Short read mapping. Input: A reference genome A collection of many 25-100bp tags (reads) User-specified parameters Output: One or more genomic coordinates for each tag

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256 views • 25 slides
Short read alignment

Short read alignment

Short read alignment. BNFO 601. Short read alignment. Input: Reads: short DNA sequences usually up to 100 base pairs (bp) produced by a sequencing machine Reads are fragments of a longer DNA sequence present in the sample given as input to the machine Usually number in the millions

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262 views • 11 slides

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