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Textpresso

To infinity and beyond…. Textpresso. What is it?. Text-mining system for scientific literature Full body text search Biological categories Groups of terms describing a concept personal curation Developed by Hans-Michael Muller et al. part of WormBase at CalTech

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Textpresso

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  1. To infinity and beyond…. Textpresso

  2. What is it? • Text-mining system for scientific literature • Full body text search • Biological categories • Groups of terms describing a concept • personal curation • Developed by Hans-Michael Muller et al. • part of WormBase at CalTech • Extensive C. elegans curation • Textpresso: an ontology-based information retrieval and extraction system for biological literatureMuller HM, Kenny EE, Sternberg PW PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21. • Textpresso.org

  3. Current Status • Fork project • Hosted on Sourceforge • http://sourceforge.net/projects/textpresso • Interface overhaul • Heavy integration with jquery datatables • http://datatables.net • User login/registration • Manage corpus through GUI • Significant code rewrite • Modularization/customization • Better database support • Plug-in API • Ajaxification • Speed increase • code works poorly with MacOSX

  4. Future Roadmap • Web services • Smarter paper analysis • Methods tagging • Better PageRank • references • In-browser paper display/highlighting • a la Google Books • Better command line functionality • Proper GMOD integration • Bioperl mashups

  5. Questions/Suggestions? • nml5566@gmail.com

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