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Chapter 5. Organic Macromolecules. Polymerization is…. the forming of large organic compounds (polymers) by the joining of smaller repeating units called monomers. M. M. M. By Dehydration Synthesis : the removal of a water molecule to form a new bond. How does polymerization occur?.
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Chapter 5 Organic Macromolecules
Polymerization is… • the forming of large organic compounds (polymers) by the joining of smaller repeating units called monomers M M M
By Dehydration Synthesis: the removal of a water molecule to form a new bond. How does polymerization occur? 1 2 3 HO HO H H Short Polymer Monomer H2O Dehydration removes a water molecule forming a new bond 1 2 3 4 HO H
How are polymers broken? • by hydrolysis - literally, “Water Splitting” • Add water to break bonds H2O 1 2 3 4 HO H Hydrolysis adds a water molecule to break a bond 1 2 3 HO H HO H Monomer Short Polymer
4 Types of Organic Polymers • Carbohydrates • Lipids • Proteins • Nucleic Acids
Carbohydrates Formula (CH2O)n 2:1 ratio of H:O Carbonyl Groups Ring form in (aq) solution Important Energy Source Cellular Structures Monomer: Monosaccharides Polymers: Disaccharides Polysaccharides
Monosaccharides Monosaccharides (simplesugars) • Contain 3-7 Carbons each • Examples: Glucose, Galactose, Fructose Glucose
Disaccharides Disaccharides (twosugars) – joined by dehydration synthesis Examples: Sucrose, Maltose, Lactose Maltose = Glucose + Glucose Lactose = Glucose + Galactose Sucrose Glucose Fructose
Polysaccharides Polysaccharides (manysugars, usually thousands) • Examples: Starch, Glycogen, Cellulose Starch Cellulose Chloroplast Starch Liver Cell Cellulose Glycogen Plant Cells Plant Cells
Starch and Cellulose Structures(Plant Polysaccharides) ά – linkages (cis- formation) are easily hydrolyzed, while β - linkages (trans-formation)are not
Glycogen and Chitin (Animals Polysaccharide) • Glycogen = glucose polymer • Stored in liver/muscle • Chitin = structural polymer in exoskeletons
Lipids • Elements: C, H, O with H:O ratio > 2:1 • Hydrophobic • Lipids function in: • Energy (E) storage, • forming cell membranes, • and as chemical messengers (ex. hormones) • Monomers: glycerol, fatty acids, sometimes phosphate groups • Polymers: • Fats (triglycerides) • Phospholipids • Steroids
OH OH OH Triglycerides Fats (Triglycerides) • Glycerol + 3 Fatty Acids • Saturated = No Double Bonds (solid) • Unsaturated = Double Bonds (liquid) OH Ester Bonds OH OH
Phospholipids Phospholipids • Glycerol with Phosphate Head + 2 Fatty Acid Chains • Amphiphilic (“Both” “lover”) • Hydrophilic head • Hydrophobic tail • Forms 2 layers in water • Makes up cell membranes Phosphate Glycerol Fatty Acids
Steroids AKA Sterols • Lipids whose Carbon Skeleton consists of 4 fused rings • Includes: • Hormones • Cholesterol • Cortisol • Makes up cell membranes OH O OH O OH HO HO O O Testosterone Estrogen
Proteins (Polypeptides) • Polymers of AA • 20 AA, all varied in their “R” groups • 9 essential AA can not be made by the body • 50% of dry weight of organisms • Varied fcns: enzymatic, structural, hormonal, transport, storage, mvmt, defense, etc. • Protein function unique with 3-D shape
H2O Proteins • Protein monomers are called amino acids • Peptide Bond: Bond between 2 Amino Acids: Amino end Carboxyl end R Group = Side Chains Backbone
Protein Structure Polypeptides fold and twist to form a specific shape to create a functional protein • Primary • Secondary • Tertiary • Quarternary
Primary Structure AA sequence
Secondary Structure • AA H-bonded at backbone • (no interaction btwn side chains) • α – Helix • β - Pleated Sheats
Tertiary Structure • More Complex Folding • Interactions btwn side chains • H bonds • Ionic Bonding (+/-) • Hydrophobic Interactions • Disulfide Bridges
Quarternary Structure • 2 or more polypeptide chains assemble • Ex. Hemoglobin (4 polypeptide chains)
Functional Proteins I am completely unchanged, and ready for some more sucrose! The twisting and folding into tertiary or quarternary structures creates active sites with a specific shape that fits specific substrates that are responsible for catalyzing reactions I am an enzyme. I am going to try to convert you. Hi sweeties, Do you remember me? I am the active site. The substrate binds to me. I am a product, too. I am a fructose now. I am now a product. I am a glucose now. In addition to what you know. I am a substrate.
Factors That Affect Protein Formation • pH • Salinity • Temperature (ex. Boiled egg) • Denaturization = unraveling of protein loss of shape and function • Renaturization can occur, but not always
Nucleic Acids Nucleic Acids Informational Polymers: Code for all of the proteins in an organism Monomers: Nucleotides Phosphate Group Pentose 5-C Sugar Ribose or deoxyribose Nitrogenous base Purines (A, G) Pyrimidines (T, C, U)
Nucleic Acids • Polymers • DNA • RNA (tRNA, mRNA, rRNA) • DNA directs RNA synthesis • RNA directs protein synthesis
Base Pairing Rules • DNA Base Pair Rules C = G A = T • RNA Base Pair Rules C = G A = U