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LABORATORY 4A: Making Sure You’ve Got A Recombinant Plasmid. 2014. Plasmid of interest, pARA-R. Restriction digest of pARA-R. Review of Lab 2A. R-tube contains pARA-R plasmid and no restriction enzymes (control) R+ tube contains pARA-R plasmid and restriction enzymes HindIII and BamH I
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LABORATORY 4A: Making Sure You’ve Got A Recombinant Plasmid 2014
Review of Lab 2A • R-tube contains pARA-R plasmid and no restriction enzymes (control) • R+ tube contains pARA-R plasmid and restriction enzymes HindIII and BamH I • Digested by incubating at 37°C for 60 minutes
Goals of Lab 4A • Determine if restriction enzymes digested the pARA-R plasmids • Use gel electrophoresis to separate the digest products according to “size” • Allow visualization of restriction fragments and non-digested plasmids on the gel
Running the gel Wells
What to expect in the visualization • Restriction fragments are linear and their speed through the gel is only determined by size • Undigested plasmids have multiple configurations and their speed through the gel is determined by size and shape
Plasmid configurations Supercoiled Nicked circle Multimer
Results DL R– R+ Multimer Nicked Supercoiled 5 Kb Linear Fragment Linear Fragment