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Grid Search for Cancer Prevention Version 1.0 An OGSA-DAI/WebDB application system

Grid Search for Cancer Prevention Version 1.0 An OGSA-DAI/WebDB application system. 12 May 2006 Ryuichi Yoshida Grid Technology Group, R&D Center Business Search Technologies Corporation http://www.bsearchtech.com/. Business Search Technologies Corporation. Corporate Profile: Office

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Grid Search for Cancer Prevention Version 1.0 An OGSA-DAI/WebDB application system

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  1. Grid Search for Cancer Prevention Version 1.0An OGSA-DAI/WebDB application system 12 May 2006 Ryuichi Yoshida Grid Technology Group, R&D Center Business Search Technologies Corporation http://www.bsearchtech.com/

  2. Business Search Technologies Corporation Corporate Profile: • Office • Tokyo Head office, Tsukuba branch, San-Jose branch • Established on February 9th, 2004. • Business contents: • Commercial Search Engine Package “WiSE” and related services. • Software I18N (Internationalization), tool and consulting. • Grid application software development: GSCP, GridASP, etc. • URL: http://www.bsearchtech.com/

  3. Grid Search for Cancer Prevention Is a joint R&D project of - • CBIE (Division of Clinical and BioInformatic Engineering), Graduate School of Medicine, University of Tokyo • GTRC/AIST (Grid Technology Research Center / National Institute of Advanced Industrial Science and Technology), Japan • BST (Business Search Technologies Corporation)

  4. What is GSCP? An overview JSNPs GSCP V1.0 Integrated query interface OMIM PubMed The Web Provide an integrated query Interface over multiple databases: both public and private. (V1.0 focus on public WebDB.) PharmGKB

  5. GSCP: Motivation and enablers Motivation: • Secure and integrated access to medical information, both private and public. Enabling technologies: • OGSA-DAI (Data Access & Integration)A middleware to grid-enable data resources • OGSA-WebDBIntegrate web databases with OGSA-DAI environment.

  6. GSCP V1.0 Functional overview JSNPs GSCP V1.0 Multiple Search OMIM PubMed Grid Search Provide two types of query integration for clinical WebDB users. PharmGKB

  7. Multiple Search Distribute a single set of search conditions to multiple query screens. Screen level, loose integration.

  8. Grid Search PubMed OMIM JSNPs PharmGKB Data level, tight integration. Cross-join queries over multiple sites

  9. Grid Search Internals OGSA-DAI interface OGSA-WebDB interface GSCP Server host Query UI (JSP+Servlet) Globus Toolkit 4.0.1 OGSA-WebDB framework Proxy database Wrappers JSNP JSNP Wrapper Client browsers OGSA-DAI SQL Query http request OMIM OMIM Wrapper Grid database service PubMed PubMed Wrapper result set result html PharmGKB PharmGKB Wrapper

  10. Project Status • V1.0 development is completed • Released 2006 March • Enhanced OGSA-WebDB enabling setting for • Maximum webdb retrieval time • Retry number • Maximum query results per webdb • Future? • More datasources ( secure access to privacy data ) • More integration: syntax level -> semantics level? ontology?

  11. Business Search Technologies Corporation

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