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Problem Solving with NetSolve

Problem Solving with NetSolve. Michelle Miller, Keith Moore, Susan Blackford, NetSolve group, Innovative Computing Lab, University of Tennessee. miller@cs.utk.edu moore@cs.utk.edu susan@cs.utk.edu. www.cs.utk.edu/netsolve netsolve@cs.utk.edu. NetSolve. Problem Statement

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Problem Solving with NetSolve

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  1. Problem Solving with NetSolve Michelle Miller, Keith Moore, Susan Blackford, NetSolve group, Innovative Computing Lab, University of Tennessee miller@cs.utk.edu moore@cs.utk.edu susan@cs.utk.edu www.cs.utk.edu/netsolve netsolve@cs.utk.edu

  2. NetSolve • Problem Statement • Software libraries could be easier to install and use • Locate library • Configure and install library on local machine • Need access to bigger/different machines

  3. NetSolve • Solution • Simple, consistent interface to numeric packages • Ease of use – locate/use already configured/installed/running solvers through simple procedure call • Resource sharing (hardware & software) • Greater access to machine resources • New software packages made available simply

  4. NetSolve Architecture Server1 blas, petsc Agent Server2 lapack, mcell Client Proxy Server 3 blas, itpack Server4 superLU Matlab Client Server5 aztec, MA28

  5. NetSolve Architecture Server1 blas, petsc Agent Server2 lapack, mcell Client Proxy Server 3 blas, itpack netsolve(‘problemX’, A, rhs) Server4 superLU Matlab Client Server5 aztec, MA28

  6. NetSolve Architecture Server1 blas, petsc Agent Server2 lapack, mcell Servers? Client Proxy Server 3 blas, itpack netsolve(‘problemX’, A, rhs) Server4 superLU Matlab Client Server5 aztec, MA28

  7. NetSolve Architecture Server1 blas, petsc workload Agent Server2 lapack, mcell Servers? Server1, Server3 Client Proxy Server 3 blas, itpack netsolve(‘problemX’, A, rhs) Server4 superLU Matlab Client Server5 aztec, MA28

  8. NetSolve Architecture Server1 blas, petsc Agent Server2 lapack, mcell Client Proxy Server 3 blas, itpack problemX, A, rhs Server4 superLU Matlab Client Server5 aztec, MA28

  9. NetSolve Architecture Server1 blas, petsc Agent Server2 lapack, mcell Client Proxy Server 3 blas, itpack result Server4 superLU Matlab Client Server5 aztec, MA28

  10. Parallelism in NetSolve • Task Farming • Single request issued that specifies data partitioning • Data parallel, SPMD support

  11. Task Farming Interface /*** BEFORE ***/ preamble and initializations; status1 = netslnb(‘iqsort’, size1, array1, sorted1); status2 = netslnb(‘iqsort’, size2, array2, sorted2); . . . status20 = netslnb(‘iqsort’, size20, array20, sorted20); program continues; /*** AFTER ***/ preamble and initializations; status_array = netsl_farm(‘iqsort’, “i=0,19”, netsl_int_array(size_array, “$i”), netsl_ptr_array(input_array, “$i”), netsl_ptr_array(sorted_array, “$i”)); program continues;

  12. Request Sequencing • Sequence of computations • Data dependency analysis to reduce extra data transfers in sequence steps • Transmit superset of all input/output parameters and make persistent near server(s) for duration of sequence execution.

  13. command1(A, B) sequence(A, B, E) Client Client Server Server result C netsl_begin_sequence( ); netsl(“command1”, A, B, C); netsl(“command2”, A, C, D); netsl(“command3”, D, E, F); netsl_end_sequence(C, D); input A, intermediate output C netsl(“command1”, A, B, C); netsl(“command2”, A, C, D); netsl(“command3”, D, E, F); command2(A, C) Client Server Server result D intermediate output D, input E command3(D, E) Client Client Server Server result F result F Data Persistence

  14. NetSolve Applications • MCell (Salk Institute) • Monte Carlo simulator of cellular microphysiology – synaptic transmission • Large numbers of same computation with different parameters (diffusion and chemical reaction calculations) • Task farming used for parallel runs

  15. Client-Proxy Interface Client-Proxy Interface Client-Proxy Interface Globus Proxy NetSolve Proxy Ninf Proxy Legion Proxy ? NetSolve Services NetSolve Agent Legion Services Ninf Services GRAM NetSolve Servers GASS MDS NetSolve and Metacomputing Backends NetSolve Client Client-Proxy Interface

  16. NetSolve Authenticationwith Kerberos • Kerberos used to maintain Access Control Lists and manage access to computational resources. • NetSolve properly handles authorized and non-authorized components together in the same system.

  17. NetSolve Authenticationwith Kerberos NetSolve servers NetSolve agent Kerberos KDC Typical NetSolve Transaction Kerberized Interaction NetSolve client

  18. Servers register their presence with the agent and KDC Client sends ticket and input to server; server authenticates and returns the solution set Client requests ticket from KDC Client sends work request to server; server replies requesting authentication credentials Client issues problem request; Agent responds with list of servers NetSolve Authentication with Kerberos NetSolve servers NetSolve agent Kerberos KDC NetSolve client

  19. NetSolve Server NetSolve Server CPU sensor CPU sensor Host Machine Host Machine NetSolve Agent NWS Forecaster NWS Memory Host Machine NWS Integration Sensors report to NWS memory.

  20. NetSolve Server NetSolve Server CPU sensor CPU sensor Host Machine Host Machine NetSolve Agent NWS Forecaster NWS Memory Host Machine NWS Integration Request?

  21. NetSolve Server NetSolve Server CPU sensor CPU sensor Host Machine Host Machine NetSolve Agent NWS Forecaster NWS Memory Host Machine NWS Integration Agent probes NWS Forecaster

  22. NetSolve Server NetSolve Server CPU sensor CPU sensor Host Machine Host Machine NetSolve Agent NWS Forecaster NWS Memory Host Machine NWS Integration Forecaster probes memory.

  23. NetSolve Server NetSolve Server CPU sensor CPU sensor Host Machine Host Machine NetSolve Agent NWS Forecaster NWS Memory Host Machine NWS Integration Forecaster makes forecast

  24. NetSolve Server NetSolve Server Agent chooses server CPU sensor CPU sensor Host Machine Host Machine NetSolve Agent NWS Forecaster NWS Memory Host Machine NWS Integration

  25. Newly enabled libraries

  26. Sparse Matrices/Solvers • Support for compressed row/column sparse matrix storage -- significantly reduces network data transmission. • Iterative and direct solvers: PETSc, Aztec, SuperLU, Ma28, … • All available solver packages will be made available from UTK NetSolve servers and others. SPOOLES SuperLU PETSc MA28

  27. Matlab interface • Calls to PETSc, Aztec • [x, its] = netsolve(‘iterative_solve_parallel’,‘PETSC’,A,b,1.e-6,500); • [x, its] = netsolve(‘iterative_solve_parallel’, ‘AZTEC’,A,b,1.e-6,500); • Similar for SuperLU, MA28 • [x] = netsolve(‘direct_solve_serial’,’SUPERLU’,A,b,0.3,1); • [x] = netsolve(‘direct_solve_serial’, ‘MA28’,A,b,0.3,1); • Calls to LAPACK, ScaLAPACK • [lu, p, x, info] = netsolve(‘dgesv’,A,b); • [lu,p,x,info] = netsolve(‘pdgesv’,A,b);

  28. ‘LinearSolve’ interface • Uncertain which library to choose? • ‘LinearSolve’ interface chooses the library and appropriate routine for the user • [x] = netsolve(‘LinearSolve’,A,b);

  29. Heuristics • Interface analyzes the matrix A • matrix shape (square, rectangular)? • If rectangular, choose linear least squares solver from LAPACK • matrix element density • If square, is the matrix sparse or dense? • Manually check the percentage of nonzeros and transform to sparse matrix format • If dense, is it symmetric?

  30. Heuristics cont’d • If sparse, and dense band, use LAPACK • If sparse, and if there is a block or diagonal structure (Aztec), can yield higher performance (level 3 BLAS) • If sparse, direct or iterative solver? • Size of the matrix (large matrix, fill-in for a direct method can be larger than iterative)

  31. Heuristics cont’d • Numerical properties (direct solvers can handle more complicated matrices than iterative methods) • How to estimate fill-in and gauge numerical properties of A? • Future Work: ‘Eigensolve” interface

  32. Interfacing to Parallel Libraries • Improved task scheduling and load balance • NWS memory sensor, latency and bandwidth sensors • provide matrix distributions for the user • heuristics for the best choice of the # of processors, amount of matrix per processor, process grid dimension ...

  33. Get NetSolve1.3 Now! • Release date -- April 2000! • UNIX client/agent/server source code. • UNIX client binaries available. • Win32 dlls for C/Matlab/Mathematica clients. www.cs.utk.edu/netsolve

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