1 / 6

Health Ontology Mapper NCBO BioPortal Integration

Health Ontology Mapper NCBO BioPortal Integration. 2010 i2b2.org Academic User’s Group Oct 13 2010 Rob Wynden (UCSF). Interrelated Teams. Health Ontology Mapper: UCSF, UCD, URochester, U Penn, UW caGrid and TRIAD: OSU I2b2 and SHRINE: Harvard

soleil
Download Presentation

Health Ontology Mapper NCBO BioPortal Integration

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Health Ontology Mapper NCBO BioPortal Integration 2010 i2b2.org Academic User’s Group Oct 13 2010 Rob Wynden (UCSF)

  2. Interrelated Teams • Health Ontology Mapper: UCSF, UCD, URochester, U Penn, UW • caGrid and TRIAD: OSU • I2b2 and SHRINE: Harvard • HSDB: UCSF, WUSTL, Stanford, UCD, Columbia, Duke, Emory, Johns H, Mayo, OSU, Rockefeller, UW, UTSW, UTHSC (a caGRID based Network) • CICTR: UW, UCSF, UCD (SHRINE grid evaluation)

  3. Project Objectives • General purpose instance mapper that can provide a best-fit translation of locally encoded data into multiple standard formats • To allow the just-in-time translation of locally encoded data (not handled during ETL) • To allow researchers to request data in any standard format that they require • Enable inter-institutional sharing in standard formats using i2b2 with SHRINE and caGRID (for example RxNorm over the CICTR grid)

  4. New Project Objectives • To allow HOM to reference both source and target terminologies as published on BioPortal. • To allow HOM to consume HL7 CTSII instance maps directly from the NCBO BioPortal. • To create a new terminology infrastructure that is completely free of UML. (No clean translation from OWL to UML exists). • To allow terminologists to create &curate terminologies on BioPortal.

  5. Thanks! Questions? Rob Wynden Manager of Research & Development Academic Research Systems UCSF

More Related