1 / 1

SBML-PET-MPI: A parallel parameter estimation tool for SBML models

SBML-PET-MPI: A parallel parameter estimation tool for SBML models. Features of SBML-PET-MPI Fast: speed up with multiple processors (MPI protocol). Less than 5 min for the Epo model with 7 cpus. Estimates parameter values by fitting multiple experimental data sets.

spiro
Download Presentation

SBML-PET-MPI: A parallel parameter estimation tool for SBML models

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. SBML-PET-MPI: A parallel parameter estimation tool for SBML models Features of SBML-PET-MPI • Fast: speed up with multiple processors (MPI protocol). Less than 5 min for the Epo model with 7 cpus. • Estimates parameter values by fitting multiple experimental data sets. • Peform uncertainty and identifiability analysis of the estimated parameters with profile likelihood exploit algorithm or bootstrap method with synthetic data sets. Reference: Zi Z., SBML-PET-MPI: A parallel parameter estimation tool for Systems Biology Markup Language (SBML) based models, Bioinformatics, 2011 (In press) Speed up of SBML-PET-MPI Test model: Epo model, Becker et al., Science, 2010 Data fitting result from SBML-PET-MPI

More Related