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Lecture 9. DNA & Replication. ____________ Genomes. Prokaryotic genomes are made of DNA. Prokaryotic chromosomes can be circular or linear. Genome floats freely within cytoplasm Where is DNA found in prokaryotes? ______________ ______________. Transmission electron micrograph of
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Lecture 9 DNA & Replication
____________ Genomes • Prokaryotic genomes are made of DNA. • Prokaryotic chromosomes can be circular or linear. • Genome floats freely within cytoplasm • Where is DNA found in prokaryotes? • ______________ • ______________ . Transmission electron micrograph of E. coli O157:H7 showing flagella. (Courtesy of the CDC)
____________ Genomes • The genomes of eukaryotic organisms are made of DNA. • Eukaryotic genomes frequently include several to many linear chromosomes sequestered within membrane-bound nucleus (How many do we have?). • Where is DNA found in eukaryotes? • Nuclear DNA • Extranuclear DNA (Where is extranuclear DNA?) Human epithelial cells stained with DAPI (blue, to show the nucleus) and phallotoxin (red, to show F-actin in the cell body) Courtesy of RL Alford, PhD
Nucleotides and Nucleic Acids
Organic Molecules – Nucleic Acids Nucleic acids (both RNA and DNA) are polymers made up of monomers called ______________. Nucleic acids deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) = genetic material of cells. Names derived from type of sugar contained within molecules = ribose Nucleotides Each monomer of nucleic acid is a nucleotide and consists of 3 portions: - a _________ - one or more _____________________ - one of five cyclic ________________________ +adenine, guanine (double-ringed purines) + cytosine, thiamine or uracil (single-ringed pyrimidines) Image: Ashcraft Wiki
Organic Molecules – Nucleic Acids Nucleic Acid Structure Nucleotides linked by covalent bonds between _________ of one nucleotide and _________of next (sugar-phosphate backbone). Nitrogenous bases extending from it like teeth of a comb. Image: www.geneticengineering.org/.../DNA.htm
Nucleic Acids - DNA DNA is a double stranded molecule, analogous to a ladder. The “ladder” = • two deoxyribose-phosphate chains form the “side rails” • base pairs, linked by hydrogen bonds, form the “rungs”. Purine Bases (double ring) Adenine & Guanine Pyrimidine Bases (single ring) Cytosine & Thymine Base Pairs(purine always pairs with pyrimidine) _________ + _________ _________ + _________ Hydrogen bonds form between specific bases of two nucleic acid chains, forming a stable, ________-________ DNA molecule. Hydrogen bonds twist the phosphate-deoxyribose backbones into a helix. Image: www.biologycorner.com/bio1/DNA.html
Nucleic Acid Function Replication Transcription Translation
Replication Copying the genetic material is REPLICATION. Replication occurs prior to ________________, because the new, daughter cell will also need a complete copy of cellular DNA. Replication
DNA Replication • __________ a double-stranded DNA molecule. • Each DNA strand holds the same genetic information, so both strands can serve as templates for the reproduction of opposite strand. • The _________ or __________ strand is preserved and the ______ or ___________ strand is assembled from nucleotides • This is called ___________________ replication. Replication
DNA Replication • The resulting double-stranded DNA molecules are identical. • In a cell, DNA replication must happen before cell division. • _________ replicate their DNA throughout the interval between cell divisions. • In ____________, timings are highly regulated. Replication
______________ DNA Replication: Replication “Bubbles” • Origin of replication (“bubbles”): beginning of replication • Replication fork: ‘Y’-shaped region where new strands of DNA are elongating Replication
_______________ DNA Replication: One Origin • Prokaryotic DNA is arranged in a circular shape, and there is only one replication origin when replication starts. • Despite these differences, the underlying process of replication is the same for both prokaryotic and eukaryotic DNA. Replication
How Do Nucleotides Put Themselves Together Into Nucleic Acids? • An anabolic polymerization process. - Anabolic or Anabolism is….? _____________________________ - Polymerization = taking monomers and putting them together into polymers (large molecules composed of many monomers). • Polymerization requires ___________ (building blocks) and ________. - Triphosphate deoxyribonucleotides provide both. - These building blocks of DNA bring their own energy for polymerization. Replication
DNA Replication:__________ Nature of DNA • Sugar/phosphate backbone runs in opposite directions. • One strand runs 5’ to 3’, while the other runs 3’ to 5’. •DNA polymerase, enzyme that facilitates addition of nucleotides in building the new DNA strand, • Can only adds nucleotides at the free 3’ end Why is this important? Replication
DNA Replication: Leading & Lagging Strand ________ Strand Synthesis toward the replication fork (only the 3’ to 5’ of the master strand). ________ Strand Synthesis away from the replication fork (Okazaki fragments); joined by DNA ligase. Replication
DNA Replication VIDEO: http://207.207.4.198/pub/flash/24/24.html
Reminder…Why is the DNA copied? Replication occurs prior to cell division, because the new, daughter cell will also need a complete copy of cellular DNA. Replication
Replication Mistakes: _________ of Genes • Change in the nucleotide base sequence of a genome; rare. • Almost always deleterious (bad). • Rarely lead to a protein having a novel property that improves ability of organism and its descendents to survive and reproduce.