Figure 2

1. Figure 2 Chicken Gga 1 188.2 Mb Chicken Gga 3 108.6 Mb Great reed warbler LG1 30.7 – 70.8 cM Great reed warbler Unlinked: Ase27 Ase27 Ase18 - 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 – – – – Ase18 3.2 3.2 3.2 3.2 Great reed warbler LG5 9.4 – 22.5 cM 4.5 4.5 4.5 4.5 5.7 5.7 5.7 5.7 8.9 8.9 8.9 8.9 – – – – Ase60 9.0 9.0 9.0 9.0 Ase60 11.9 11.9 – – Ase55 Ase55 14.6 14.6 14.6 14.6 – – – – Ase9 Ase38 0.0 Pdoµ6 Ase9 Ase56 0.0 1.5 Pdoµ6* 2.8 23.4 23.4 23.4 23.4 – – – – Ase7 4.8 7.5 Ase7 8.7 – Ase63 9.4 30.7 30.7 30.7 30.7 11.5 – HrU5 Escμ6 16.5 – Aar8* (Escμ6) 22.5 – Ase8 70.8 70.8 70.8 70.8 – – – – Ase51 Ase51 Ase51 Ase51 Chicken Gga 2 147.6 Mb Great reed warbler LG3 21.7 – 31.6 cM Chicken Gga 5 56.3 Mb Great reed warbler LG6 3.6 –21.1 cM 0.0 – Gf15 0.0 0.1 – PAT MP2-43 2.0 Ase21 0.0 0.0 0.0 0.0 0.0 6.9 0.0 0.0 0.0 0.0 0.0 – – – – – Ase21 Ase21 Ase21 Ase21 Ase21 Ase44 2.2 2.2 7.6 – Cuμ04 PmaTGA42 10.7 Ase32 2.3 2.3 2.3 2.3 2.3 8.3 Cuµ04 3.6 3.6 3.6 3.6 3.6 Mcyμ4 9.7 11.7 – PmaTGAn42 Aar4 (Mcyμ4)# 10.9 10.9 10.9 10.9 10.9 – Ase48 15.9 – Ase10 18.2 – Pdoµ4 Ase48 13.4 13.4 13.4 13.4 13.4 – – – – – Aar2 21.7 17.7 17.7 17.7 17.7 17.7 – – – – – WBSW7 WBSW7 WBSW7 WBSW7 WBSW7 Ase10 21.1 21.1 21.1 21.1 21.1 – – – – – MSLP2 MSLP2 MSLP2 MSLP2 MSLP2 31.6 – LOX1 Great reed warbler Unlinked: Aar2 LOX1

2. Chicken Gga 7 37.4 Mb Great reed warbler LGZ 45.3 cM Great reed warbler LG11 0 cM 0.0 0.0 0.0 0.0 Aar1 Aar1 Aar1 Aar1 0.0 0.0 0.0 0.0 – – Cu Cuμ28 μ Cuμ28 Chicken Gga Z_random 15.0 Mb Ase12 Ase12 { VLDLR9† BRM12† BRM15† VLDLR9† Great reed warbler LG2 25.7 – 39.3 cM 34.2 34.2 BRM12† 35.3 35.3 35.3 35.3 BRM15† CHDZ-20† CHD-Z† 45.3 45.3 45.3 45.3 Ase50 Ase50 Ase50 Ase50 Ase50 – ZL54 0.0 0.0 0.0 Chicken Gga Z 33.6Mb Chicken Gga 19 9.5 Mb G61 G61 G61 G61 ZL54 Cdi38 25.7 39.3 39.3 – Cdi38