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ASCC Database Services

Explore the range of Oracle database services available at ASCC for bioinformatics applications, from Oracle on Grid to Bio-portal and Mouse Tracking System.

thomascharles
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ASCC Database Services

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  1. ASCC Database Services Meng-Hang Ho Academia Sinica Computing Centre Taipei/Taiwan 13-Dec-2004

  2. Oracle Database Services in ASCC • Oracle databases in Bioinformatics • Currently available databases services • Applications on Bio • Oracle on Grid • Applications on Grid • ASCC and 3D

  3. Available Services • ASCC Oracle budget currently comes from NRPGM (National Research Program for Genomic Medicine) • Currently available (till the end of 2004) • Oracle 9.2.1 on Tru64 • Oracle 9.2.1 on Linux • Oracle 9.2.1 on Solaris • Oracle 9.2.1 on AIX • Our project intends to buy an Oracle 10g RAC on Linux (early 2005)

  4. ASCC Oracle Enable Application in Bio • SMD • (Standard Micro Array Databases) • Oracle 9.2.1 on RH7.3 • Perl with Oracle backend • Array Express (from EBI) • Oracle 9.2.1 on RH7.3 • Servlet with JSP front end • Mage ML integrated • NGC (National Genomic Center) • Oracle 9.2.1 on Tru64 • App/DB are designd by ASCC • PHP, javascript

  5. ASCC Oracle Enable Application in Bio (cont’d) • MMP Mouse Tracking System • Mutant Mouse Project • Oracle 9.2.1 on RHEL 2.1 (IBM xServer) • Java Swing, Java Webstart • App/DB are designed by ASCC • ASCC Bio-portal • Oracle 9.2.1 on RHEL 2.1 • DBEST, DBSNP and Swiss-Protein databases • Meta Center (upcoming project) • Oracle 10G RAC on Scientific Linux (??)

  6. Oracle on Grid • RLS • Oracle DB 9.2.1 on RHEL 2.1 • SRB (Storage Resource Broker) on Oracle 10G • SRB Mcat (Metadata Catalog) on Oracle 10G • Build application for Digital Archive, Bio-diversity and Atmosphere Science • ARDA participation • LHCb metadata catalog • AMI from ATLAS

  7. ASCC and 3D • Develop 3D middleware • Help to test Oracle Streaming feature on Oracle 10g (ChiWei Wang) • J. H. Wu will join 3D development work next Feburary(2005) • Share existence experience • Porting Bio-informatics database/application on 3D • Participate 3D production site • Deploy necessary Oracle technology

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