Partner 6: EBI Microarray Informatics Team Alvis Brazma

Feb 02, 2013

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Our participation. WP2 Data warehousingWP3 Novel functional information from integrated datasetsWP4 Cell cycle modelling and simulationWP5 Cell cycle portal. Microarray Informatics @ EBI (Review). DatabasesArrayExpress RepositoryArrayExpress WarehouseAnalytical ToolsExpression Profile

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Partner 6: EBI Microarray Informatics Team Alvis Brazma

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Microarray Design and Analysis

Microarray Design and Analysis. Jeremy D. Glasner. Genetics 875 November 20, 2007. What is a Microarray?. A collection of DNA sequences arrayed on a solid substrate usually with thousands of individual DNA spots. Gene expression analysis. Massively parallel biochemistry aimed

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Introduction to Bioinformatics Microarrays2: Microarray Data Normalisation

Introduction to Bioinformatics Microarrays2: Microarray Data Normalisation. Course 341 Department of Computing Imperial College, London Moustafa Ghanem. Lecture Overview. Background and Motivation Introduction Microarray experiments and microarray data analysis Sources of variability

437 views • 28 slides

Microarray Pitfalls

Microarray Pitfalls. Stem Cell Network Microarray Course, Unit 3 October 2006. Goals. To provide some guidelines on Affymetrix microarrays: How to use them How not to use them Things to keep in mind when designing experiments and analyzing data

379 views • 16 slides

The How and Why of the American Correctional Association’s Performance Outcome Measures

The How and Why of the American Correctional Association’s Performance Outcome Measures. Denise M. Robinson CAC Commissioner and CEO, Alvis, Inc Jennifer Stohr Audit Chair and Director of Accreditation, Alvis, Inc. Three perspectives. The ACA Manager The Auditor The Commissioner. WHY?.

527 views • 32 slides

Microarray Technology

Microarray Outreach Program Vermont Genetics Network University of Vermont. Microarray Technology. Outline of the lecture Overview of Microarray Technology Types of Microarrays Manufacturing Instrumentation and Software Data Analysis-Basic Applications. Microarray Development.

2.03k views • 48 slides

Microarray Basics

Microarray Basics. Part 1: Choosing a platform, setting up, data preprocessing. Experimental design. What type of microarray What overall design strategy How many replicates. Type of Microarray. One colour. Two colour. Short oligo. cDNA. Long oligo. Genome wide. Custom.

637 views • 47 slides

Microarray - Introduction

Microarray - Introduction. Ka-Lok Ng Department of Bioinformatics Asia University http://ppi.bioinfo.asia.edu.tw/klng. Graduate syllabus. Topics to be covered. Introduction - RNA expression Experimental design, image processing, Microarray databases

778 views • 61 slides

MIAME and ArrayExpress – a standard for microarray gene expression data and the public database at EBI

MIAME and ArrayExpress – a standard for microarray gene expression data and the public database at EBI. Microarray Informatics Team EMBL- EBI (European Bioinformatics Institute) Transcriptome Symposium, April 2002 CHU Pitié-Salpêtrière, Université Paris VI. Why have a public database?.

371 views • 22 slides

Mrs. Alvis ’ Class

Mrs. Alvis ’ Class. Science Inquiry Showcase 2011-2012. Which liquid will evaporate the most over 7 days: water, Cherry 7 Up, dark corn syrup, hand sanitizer, vinegar, or vegetable oil?. Hypothesis.

283 views • 14 slides

Tissue Microarray Data Standards

Tissue Microarray Data Standards. Jules J. Berman, Ph.D., M.D. Program Director, Pathology Informatics Cancer Diagnosis Program National Cancer Institute *All opinions herein are Dr. Berman’s and do not represent those of any federal agency.

285 views • 15 slides

The Pat Brown DNA Microarray Chip

The Pat Brown DNA Microarray Chip. cDNA Microarray Technology . - first developed by Pat Brown and colleagues at Stanford University -developed for high-throughput measurement of expression patterns of thousands of genes -simplest realization of this technology is the. spotted DNA microarray.

428 views • 26 slides

DNA Microarray

DNA Microarray. Microarray Printing. 96-well-plate (PCR Products). 384-well print-plate. Microarray. Differential Expression. Each cell contains a complete copy of the organism’s genome Cells are of many different types and state e.g. blood, nerve, skin cells, etc

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MICROARRAY for DUMMIES

MICROARRAY for DUMMIES. Dr. Shoumen Datta. An old dog learns new tricks! Proteins in the Post-genomic Era. 15 Aug 1999. Focus on Technology. Microarray & DNA Chips Who needs it? Scope Principle Materials & Methods Observations & Applications Limitations Summary. Focus on Technology.

795 views • 33 slides

Support Feature Machine for DNA microarray data

Support Feature Machine for DNA microarray data. Tomasz Maszczyk and Włodzisław Duch Department of Informatics, Nicolaus Copernicus University, Toruń , Poland RSCTC 2010. Plan. Main idea SFM vs SVM Description of our approach Results Conclusions. Main idea.

285 views • 18 slides

Microarray Data Analysis

Microarray Data Analysis. Stuart M. Brown NYU School of Medicine. What is a Microarray. A simple concept: Dot Blot + Northern Reverse the hybridization - put the probes on the filter and label the bulk RNA Make probes for lots of genes - a massively parallel experiment

668 views • 47 slides

MIAME and Ontologies for Sample Description

MIAME and Ontologies for Sample Description. Helen Parkinson Microarray Informatics Team European Bioinformatics Institute EMBO Course, October 2001. Talk Structure. Standards Ontologies for gene expression data

576 views • 46 slides

MARS: Microarray analysis, retrieval, and storage system

MARS: Microarray analysis, retrieval, and storage system. Albert F. Cervantes. Overview. Microarray Background Mars Implementation Software Architecture Systems Data Interfaces Web Services Access Control Remarks. Microarray Background. Popular technique

232 views • 11 slides

Institute of Informatics, Slovak Academy of Sciences

Institute of Informatics, Slovak Academy of Sciences. Michal Laclavík Ladislav Hluch ý. Partner Description. Institute of Informatics (II SAS) is one of more than 50 scientific and research institutes of Slovak Academy of Sciences, Bratislava, Slovakia.

387 views • 21 slides

MICROARRAY TECHNOLOGY

MICROARRAY TECHNOLOGY. By Sehreen Saddique Ibtesam Riaz Bakhtawer Nasrullah University of Gujrat. OUTLINE. 1. Introduction of microarray. 2. Types of microarray. 3. Applications of microarray. DNA MICROARRAY. Gene expression. DNA MICROARRAY.

793 views • 30 slides

ArrayExpress – a public database for microarray gene expression data

ArrayExpress – a public database for microarray gene expression data. Helen Parkinson Microarray Informatics Team European Bioinformatics Institute Transcriptome 2002, Seattle. Why have a public database?. Easy data access Resolves local storage issues

632 views • 35 slides

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