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MARKERS CurationTracking CurationDate GeneID HgbaseID GeneRegion ProtSeqChanged SpliceSiteChanged

PML: OMG Standard (polymorphism markup language) DNA & Marker domains. PHENOTYPES. GENOME CO-ORDINATES. ASSAYS. CORRELATION / ASSOCIATION. DB_CROSSREFS ID_Lists. HAPLOTYPES. GENOTYPES. MARKERS CurationTracking CurationDate GeneID HgbaseID GeneRegion ProtSeqChanged

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MARKERS CurationTracking CurationDate GeneID HgbaseID GeneRegion ProtSeqChanged SpliceSiteChanged

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  1. PML: OMG Standard (polymorphism markup language) DNA & Marker domains PHENOTYPES GENOME CO-ORDINATES ASSAYS CORRELATION / ASSOCIATION DB_CROSSREFS ID_Lists.... HAPLOTYPES GENOTYPES MARKERS CurationTracking CurationDate GeneID HgbaseID GeneRegion ProtSeqChanged SpliceSiteChanged ValidityStatus VariationType FlankDNAType UpstreamSeq DownstreamSeq CytogenLocn RepeatContent ALLELES CurationTracking CurationDate HgbaseID AlleleID DNASeq mRNASeq CodonSeq DonorSpliceSite AcceptSpliceSite AASeq  GENES GeneID GeneName GeneSymbol ChmLocation 1  1 1 1 1 REFSEQS CurationTracking CurationDate HgbaseID GenomicSeqAccn GenomicSeqNumb cDNASeqAccn cDNASeqNumb PrtSeqAccn PrtSeqNumb 1 MARKERSOURCE HgbaseID SourcesID HotLink HotlinkID   SOURCES SourcesID DbNameHotLink CitationID SubmissionText SubmittersID 1  CITATIONS CitationID CitationDetails HOTLINKS URLs... 1  SUBMITTERS SubmittersID SubmitterName ContactDetails FREQUENCIES AlleleID PopnID SourceID Frequency NumberScored  POPULATIONS PopnID NumberPeople Population 1  1

  2. PML-2 Improved genotype data + phenotype data MAP TRANSLATION UML SEQUENCE ASSAY FREQUENCY HAPLOTYPE IDENTIFIABLE PUBLICATIONS

  3. GENOTYPING(experiment, results) MARKER(variant, alleles, assay) SAMPLES(phenotypes, sets) DNA(plates, arrays, etc)

  4. FireBird database software Ms Visual Studio.NET Data-Handlingcode Graphical User-Interface code Database modeland code

  5. GenoScore: A Self-Contained Database and GUI for Genotype Data Import, Export, and Integration for Small to Large Genotyping Facilities

  6. PHENOTYPEGENERALKEYWORD PHENOTYPESPECIFICKEYWORD PHENOTYPEGENERALCITATION PHENOTYPESPECIFICCITATION * PHENOTYPEGENERAL PhenotypeGeneralID * KeywordID * KEYWORD * PhenotypeGeneralID * PhenotypeGeneralID PHENOTYPEDISEASEAREA PHENOTYPECATEGORY * KeywordID * * * PhenotypeSpecificID DiseaseAreaID CategoryID PhenotypeGeneralID * CitationID * DISEASEAREA CATEGORY CITATION * CitationID * * PhenotypeGeneralID PhenotypeSpecificID PHENOTYPESPECIFIC PhenotypeSpecificID * OBSERVATION SAMPLESET / ASSAYSET * ObservationID VALUE

  7. * GenotypecomboID HaplotypecomboID AllelecomboID * * dbSNPValidationCode ValidationCode * AutoMarkerID BUILD MARKER * * ReplacedMarker AutoMarkerID HGVbase-G2P RESEARCHER ResearcherID ResearcherID * * AUTHOR SUBMITTER * * StudySubmissionID StudySubmissionID STUDYSUBMISSION SAMPLESETOVERLAP EXPERIMENTOVERLAP OLIGO * * ExperimentID SamplesetID * AssayID StudySubmissionID StudySubmissionID StudySubmissionID * * * SAMPLESET PHENOTYPE:General, Specific, Normal range,Assessment, Keywords,Citations, Hierarchy EXPERIMENT ASSAY * ObservationID * SamplesetID * ExperimentID * AssayID ASSAYSET * * StudySubmissionID FREQUENCY AssayID * AssaysetID STUDYSUBMISSIONCROSSREF ASSAYMARKER * COORDINATES: GenesBands * CrossrefID * AutoMarkerID AutoMarkerID * StudySubmissionID STUDYSUBMISSIONCITATION HAPLOTYPECOMBO ALLELECOMBO GENOTYPECOMBO ANNOTATIONS: GenesGeneRegions RepeatSeqsSeq Quality DuplicationsCNPsFunclPredictns * CitationID AutoHaplotypeID * * AutoAlleleID * AssayID * GenotypeID HAPLOTYPE ALLELE MARKER GENOTYPE HAPLOTYPESET * * AutoMarkerID HaplotypesetID AutoHaplotypeID AutoAlleleID CITATION * AutoMarkerID * * HAPLOTYPEALLELE MARKERCOORD * GenotypeID * GENOTYPEDEF AutoHaplotypeID/AutoAlleleID * AutoMarkerID * CitationID * CrossrefID MARKERCROSSREF CITATIONCROSSREF CROSSREF * * AutoHaplotypeID CrossrefID HAPLOTYPECROSSREF * CrossrefID

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