1 / 8

Source: Daniel Coca’s Research paper

Source: Daniel Coca’s Research paper. Java Native Interface- C++- FPGA. 10 sample files upload for spectrum processing. Peak list charts for 10 spectra each within range of 70K to 250K plotting points. SVG, Ajax JavaScript canvas – Constraints? non-scalability.

valentina-ovid
Download Presentation

Source: Daniel Coca’s Research paper

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Source: Daniel Coca’s Research paper

  2. Java Native Interface- C++- FPGA. • 10 sample files upload for spectrum processing. • Peak list charts for 10 spectra each within range of 70K to 250K plotting points. • SVG, Ajax JavaScript canvas – Constraints? non-scalability. • Java Applets with provision to zoom and pan.

  3. Java Web Services through wsdl file for uploaded spectrum and parameter file. Use of @WebServiceRef annotation • Java Web Services through JAX-WS using @WebMethod, @WebParam. Spectra and parameters passed as strings. • FASTA sequence search by memory mapped I/O in parallel.

  4. JMol structure information sent as applet param element. • Constraints? What if the protein structure is too large or if it is a genome structure. • Just pass meta-structure information to the browser. E.g. Functional groups and when the zoom operation is performed an AJAX/SVG/JSON script can render the details at atomic level.

  5. Modelling of 4.95 x 10^9 atoms should take 32 bits. • Each 4 byte value is an index to meta information about the atom as in PDB or the mmCIF format. • How to model molecular transformation, transcription for large protein/genomic sequences? • Given a chemical reaction/transformation of a polymer like protein, not all the atoms undergo dis-orientation.

  6. So derive equivalent classes for these isomorphic reaction types and perform vector transforms (grad and curl) operations.

More Related