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Computational Genomics

Computational Genomics. USA: http://bioinfo.uncc.edu/szhang Campus: http://it.tjnu.edu.cn/sqzhang QQ group: 255757939. NCBI: National Center for Biotechnology Information. http://www.ncbi.nlm.nih.gov/. PubMed. Papers search from PubMed. Download data from NCBI’s FTP.

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Computational Genomics

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  1. Computational Genomics USA: http://bioinfo.uncc.edu/szhang Campus: http://it.tjnu.edu.cn/sqzhang QQ group: 255757939

  2. NCBI: NationalCenterforBiotechnologyInformation http://www.ncbi.nlm.nih.gov/

  3. PubMed Papers search from PubMed

  4. Download data from NCBI’s FTP

  5. BLAST: Basic local alignment search tool

  6. Using Linux terminal to visit FTP ftp ftp.ncbi.nih.gov User: anonymous PW: anonymous

  7. Next lecture • Motif finding problem • MotifClick: • Shaoqiang Zhang, Shan Li, Meng Niu, Phuc Pham, and Zhengchang Su, MotifClick: prediction of cis-regulatory binding sites via merging cliques, BMC Bioinformatics 2011, 12:238; PMID: 21679436

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