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Research in Biological medicine in Cloud Environment

Research in Biological medicine in Cloud Environment. Lixian Xi @pragma 19 Changchun, Jilin,Sep 15,2010 College of Computer Science and Technology, Jilin University, ChangChun, P.R.China. Overview. Framework in CSF. schedPluginOpal schedue policy Sort resource

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Research in Biological medicine in Cloud Environment

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  1. Research in Biological medicine in Cloud Environment Lixian Xi @pragma 19 Changchun, Jilin,Sep 15,2010 College of Computer Science and Technology, Jilin University, ChangChun, P.R.China

  2. Overview

  3. Framework in CSF

  4. schedPluginOpal schedue policy • Sort resource • Select candidate resources • Match job with resource • ResourceManagerOpal • SOAP • Monitor job status

  5. CSF4-OPAL demo Two OPAL resources: • vm2-opal 10 cpu • vm4-opal 7 cpu

  6. CSF-OPAL demo • Configuration for CSF Resource Manager <cluster> <name> vm2-opal </name> <type> OPAL </type> <host> vm2.jlu.edu.cn </host> <port> 8080 </port> <version>2.4</version> </cluster> <cluster> <name> vm4-opal </name> <type> OPAL </type> <host> vm4.jlu.edu.cn </host> <port> 8080 </port> <version>2.4</version> </cluster>

  7. CSF-OPAL demo • Step1 – query clusters available • Step2 – query opal service available • Step3 – submit job to OPAL • Step4 – query job status • Step5 – check the output file

  8. CSF-OPAL demo1 • Get opal resources available • $csf-resouce-list

  9. CSF-OPAL: demo2 • Get opal services available • $csf-service-list

  10. CSF-OPAL demo3 • Submit a autodock Job to OPAL resources • $csf-job-create –r autodock100.rsl –n autodockJob

  11. CSF-OPAL demo4 • Get job status information according to job id. • $csf-job-status autodockJob

  12. CSF-OPAL demo5 • Check the output files • http://192.168.0.4:8080/....

  13. Thank you!

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