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AUVERGRID

AUVERGRID. Matthieu Reichstadt CNRS/IN2P3 ACGRID School, Hanoi (Vietnam) November 5th, 2007 Credits: PL Reichstadt, E Medernach, JC Chevaleyre, P. Leroy. Research fields. Applied science: Physics biology Earth sciences … needs for data processing Computer system dedicated software.

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AUVERGRID

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  1. AUVERGRID Matthieu Reichstadt CNRS/IN2P3 ACGRID School, Hanoi (Vietnam) November 5th, 2007 Credits: PL Reichstadt, E Medernach, JC Chevaleyre, P. Leroy

  2. Research fields • Applied science: • Physics • biology • Earth sciences • … • needs for data processing • Computer system • dedicated software

  3. applications • Needy software • Processing resource • data storage • Resource sizing problem • Used by a large community • Mutualisable pour différentes organisations • Located in differents geographics part of the world. • Collaborative work • Software sharing • Data sharing • Resource sizing problem

  4. Situation

  5. Auvergrid for Auvergne • goals • Enable the partners to use important computing resources, large data storage capabilities, by gridifying their equipments • Put the regional grid as a node of the european grid EGEE • Plan of action • Deploy grid nodes over the auvergne • User assistance • Develop grid compliant software. Port existing software on the grid.

  6. Computing resources of Auvergrid Gridified Standalone

  7. AUVERGRID 2008

  8. Cluster OPGC 28 biprocessors

  9. Cluster of IUT Aurillac 20 biprocessors

  10. Storage at CIRI 50To

  11. LPC node cluster 200 biprocessors

  12. 2 configurations like this one Storage at LPC 60To } 56 Disks SATA 500 Go Complete Interconnections in FC/AL → DS4800 – 2 controllers } 2 Servers X345 I → 1 Storage Elément X345 2.8Ghz → 2nd Storage Elément X345 2.8Ghz / 600 Go

  13. Equipment LPC

  14. Auvergrid provides • access to the grid made simple • Some useful resources • Restricted access to local users • VO distributed services • Administration of the Auvergrid VO at LPC • Administration of the data replication service at LPC • Resources administration in Annecy and Orsay • By 09/01/07: > 50 registered users • Accessibility to the grid resources deployed by the VO of EGEE • Involved in international projects

  15. Exploitation result for 2006 • Biomed • 15% local resources used by health science’s software. • 10% of the ressources involved in the data challenge (sur la grippe aviaire)

  16. Research and auvergrid • algorithmics • Structures computing (UBP) • Discrete radioactive effects (UA) • Monte-Carlo experiment(UBP) • Scientific applications: • Life science (UA, UBP) • physics for health science (UBP, CJP) • Physics of particules (UBP) • Environment (CEMAGREF) • Chemistry (UBP) • 4 PhD and 3 postdoctoral positions

  17. Searching drugs against avianflu • goals: • Study the impact of the mutation of neuraminidase N1 on the efficiency of today’s drug (Tamiflu) • Identify new drugs • Method: • Computer calculation of the docking probability of molecules on several mutation of neuraminidase • An international project: • Academica Sinica Taïwan • ITB-CNR Italie • LPC Clermont-Ferrand H5 N1 Credit: Y-T Wu

  18. Auvergne impact • Identify the scientific goal • Preparation of the large scale deployment • Coordination of the deployment on 3 grids: Auvergrid, EGEE, TWGrid Computer calculation for the avianflu Data challenge: 2006 Phase de calculs Phase de préparation Credit: J. Salzemann, E. Medernach, M. Reichstadt World repartition of the used resources for 100 years/CPU

  19. Auvergrid, in the middle of an european dynamic Embrace (2005-2009) Intégration des données biologiques et des Outils d’analyse sur grille Réseau d’excellence FP6 European Bioinformatics Institute (International) EGEE-II (2006-2008) Infrastructure de grille européenne Infrastructure FP6 CERN (international) Auvergrid 3 engineers 1 PhD 2 engineers BioinfoGRID (2006-2007) Recherche de nouveaux médicaments sur grille Action Spécifique FP6 CNR (Italie) SHARE (2006–2007) Grilles pour la santé Action spécifique FP6 Healthgrid (Clermont-Ferrand) 1 PhD 3 engineers 8 engineers and 2 PhD in Auvergne on European projects ACGT (2005-2009) Intégration de données biologiques et médicales pour la recherche sur le cancer Projet intégré FP6

  20. Software development for life science • BLAST • Grid (multisequence) / Cluster (monosequence) • Web portal • RepeatMasker • Grid, Cluster • HMMPfam • Grid • Est2Genome • Grid, Cluster • Web portal • Secured Bl2Seq • Web portal • Secured Readseq

  21. Software development for life science • To use a grid tool provided by Auvergrid you need: • A grid certificate • An account on a UI (User Interface) • To be registered to a VO (virtual organisation) • Most softwares are availables for download • More informations: www.auvergrid.fr

  22. Auvergrid and Lifegrid • 3 goals to develop life science in the Auvergne • Creation of elementary information systems • Creation of a regional information system based on Auvergrid • Development of analysis tools • Auvergrid’s role • Share human resources and skills • Lifegrid’s “technical team” helps the scientists • Integration of biological data • Computing resources and data storage • Example : TriAnnotPipelineGrid (P. Leroy, INRA)

  23. Auvergrid and Lifegrid

  24. Auvergrid and Lifegrid

  25. Thank you

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